Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00162 ATGCAGGAATTGCTCGAGCTTGGAAGGAATCAAGAAGAAGAAACTCAGGACAGAAAAGAAACACACCATGGAAGAGTGAACGAGGGAGATCCAATGTTGAATTTGACAGGGAATGGGTTCTGCAAGAACTGTGGGGATTGGAAGGAAGAACAAGAAGAAGAAGGAGAAACTCACAGAACAAGAAAGATTTGCCTCCCAGATTACACAACTCTCTTCCAAGCTGCGACCATGGACGGCCGCACGGTGTTCACTTTGGCTGAGGTTGCCTCCCACGACAACCGCAACGACTGCTGGTTGATCATTGAGGATAAGGTATATGATGTGACAAAATTCCTCGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAAGCACTGGTAAGGATGCAACCAATGATTTTCTCGACGTCGGGCACAGCAGCGCTGCTAGTGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGATTATTCCTGCAAAAGGAGAGTACATTCCTCCTAAGCAGCCCCTATACAACCAAGACAAGACAGTGGAATTCATTATCAAGGTACTCCAGTTTCTAGCTCCCCTGGTAATTCTGGGTTTGGCTTTTGGCATCCATATCTATACCAAAACGACTTAA 630 45.87 MQELLELGRNQEEETQDRKETHHGRVNEGDPMLNLTGNGFCKNCGDWKEEQEEEGETHRTRKICLPDYTTLFQAATMDGRTVFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSSTGKDATNDFLDVGHSSAASAMMEEFYVGDIDSSIIPAKGEYIPPKQPLYNQDKTVEFIIKVLQFLAPLVILGLAFGIHIYTKTT 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1082126 1089032 - CmaCh19G001620.1 Cma19g00162 314850

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00162 209 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 80 156 IPR001199 -
Cma19g00162 209 Gene3D - 77 158 IPR036400 -
Cma19g00162 209 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 111 118 IPR018506 GO:0020037
Cma19g00162 209 Pfam Cytochrome b5-like Heme/Steroid binding domain 84 155 IPR001199 -
Cma19g00162 209 PRINTS Cytochrome B5 signature 143 155 IPR001199 -
Cma19g00162 209 PRINTS Cytochrome B5 signature 105 115 IPR001199 -
Cma19g00162 209 PRINTS Cytochrome B5 signature 130 137 IPR001199 -
Cma19g00162 209 PRINTS Cytochrome B5 signature 115 129 IPR001199 -
Cma19g00162 209 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 78 158 IPR036400 -
Cma19g00162 209 PANTHER - 81 207 - -
Cma19g00162 209 PANTHER CYTOCHROME B5 81 207 - -
Cma19g00162 209 MobiDBLite consensus disorder prediction 1 32 - -
Cma19g00162 209 MobiDBLite consensus disorder prediction 1 27 - -
Cma19g00162 209 SMART Cyt_b5_2 83 156 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00162 K23490 CYB5; cytochrome b5 - csv:101212882 243.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01271 Cma-Chr12:9906853 Cma19g00162 Cma-Chr19:1082126 2.53E-18 dispersed
Cma14g01890 Cma-Chr14:13376466 Cma19g00162 Cma-Chr19:1082126 5.06E-65 wgd
Cma17g00107 Cma-Chr17:521732 Cma19g00162 Cma-Chr19:1082126 1.80E-60 wgd
Cma19g00162 Cma-Chr19:1082126 Cma02g01681 Cma-Chr2:9474696 5.57E-88 wgd
Cma19g00162 Cma-Chr19:1082126 Cma06g01226 Cma-Chr6:8175526 2.99E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g751 . . . . . . . . . . . Cma19g00162 . . . . Cpe15g00137 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed04g2056 . Cmo19g00182 . . . . . . Bhi12g01507 Tan06g2314 Cmetu05g1957 . . . Lcy13g0455 . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G53560 77.6 2.2e-58 222.2
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G53560 76.1 2.4e-57 218.8
Cma14g01890 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.8e-52 202.6
Cma06g01244 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.5e-51 199.5
Cma17g00107 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.7e-47 186.0
Cma02g01681 . 63 188 NADPH P450 reductases AT5G53560 63.5 2.3e-44 175.6
Cma19g00162 . 80 207 NADPH P450 reductases AT5G53560 64.1 3.1e-44 175.3
Cma06g01244 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma14g01890 . 1 132 NADPH P450 reductases AT5G48810 64.9 1.1e-47 186.8
Cma17g00107 . 1 133 NADPH P450 reductases AT5G48810 61.5 1.0e-45 180.3
Cma19g00162 . 78 208 NADPH P450 reductases AT5G48810 63.2 2.9e-45 178.7
Cma02g01681 . 63 189 NADPH P450 reductases AT5G48810 62.8 1.4e-44 176.4
Cma15g01010 CST 1 134 NADPH P450 reductases AT5G48810 57.4 5.5e-44 174.5
Cma02g01139 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.6e-43 172.9
Cma14g01890 . 22 133 NADPH P450 reductases AT2G32720 84.8 9.8e-51 196.8
Cma06g01244 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.9e-50 194.5
Cma17g00107 . 22 133 NADPH P450 reductases AT2G32720 78.6 1.9e-46 182.6
Cma02g01681 . 78 189 NADPH P450 reductases AT2G32720 71.4 1.9e-41 166.0
Cma19g00162 . 97 208 NADPH P450 reductases AT2G32720 71.4 9.2e-41 163.7
Cma02g01139 CST 22 133 NADPH P450 reductases AT2G32720 66.1 6.0e-40 161.0
Cma15g01010 CST 22 133 NADPH P450 reductases AT2G32720 64.3 1.3e-39 159.8
Cma05g00451 . 1 130 NADPH P450 reductases AT1G26340 56.7 1.9e-38 156.0
Cma07g01119 CST 2 281 NADPH P450 reductases AT5G17770 80.7 3.7e-132 468.4
Cma03g00173 CST 2 281 NADPH P450 reductases AT5G17770 81.1 5.8e-130 461.1
Cma06g00055 . 2 280 NADPH P450 reductases AT5G17770 78.2 3.9e-126 448.4
Cma20g00014 . 1 282 NADPH P450 reductases AT5G17770 68.2 6.5e-113 404.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00162 Cma_Chr19 FPKM 1.033607 0.88039 3.352713 3.187697 4.996873 3.335851 4.08044 8.713483 8.854687 8.388001