Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00162 ATGCAGGAATTGCTCGAGCTTGGAAGGAATCAAGAAGAAGAAACTCAGGACAGAAAAGAAACACACCATGGAAGAGTGAACGAGGGAGATCCAATGTTGAATTTGACAGGGAATGGGTTCTGCAAGAACTGTGGGGATTGGAAGGAAGAACAAGAAGAAGAAGGAGAAACTCACAGAACAAGAAAGATTTGCCTCCCAGATTACACAACTCTCTTCCAAGCTGCGACCATGGACGGCCGCACGGTGTTCACTTTGGCTGAGGTTGCCTCCCACGACAACCGCAACGACTGCTGGTTGATCATTGAGGATAAGGTATATGATGTGACAAAATTCCTCGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAAGCACTGGTAAGGATGCAACCAATGATTTTCTCGACGTCGGGCACAGCAGCGCTGCTAGTGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGATTATTCCTGCAAAAGGAGAGTACATTCCTCCTAAGCAGCCCCTATACAACCAAGACAAGACAGTGGAATTCATTATCAAGGTACTCCAGTTTCTAGCTCCCCTGGTAATTCTGGGTTTGGCTTTTGGCATCCATATCTATACCAAAACGACTTAA 630 45.87 MQELLELGRNQEEETQDRKETHHGRVNEGDPMLNLTGNGFCKNCGDWKEEQEEEGETHRTRKICLPDYTTLFQAATMDGRTVFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSSTGKDATNDFLDVGHSSAASAMMEEFYVGDIDSSIIPAKGEYIPPKQPLYNQDKTVEFIIKVLQFLAPLVILGLAFGIHIYTKTT 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1082126 1089032 - CmaCh19G001620.1 Cma19g00162 314850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00162 209 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 80 156 IPR001199 -
Cma19g00162 209 Gene3D - 77 158 IPR036400 -
Cma19g00162 209 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 111 118 IPR018506 GO:0020037
Cma19g00162 209 Pfam Cytochrome b5-like Heme/Steroid binding domain 84 155 IPR001199 -
Cma19g00162 209 PRINTS Cytochrome B5 signature 143 155 IPR001199 -
Cma19g00162 209 PRINTS Cytochrome B5 signature 105 115 IPR001199 -
Cma19g00162 209 PRINTS Cytochrome B5 signature 130 137 IPR001199 -
Cma19g00162 209 PRINTS Cytochrome B5 signature 115 129 IPR001199 -
Cma19g00162 209 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 78 158 IPR036400 -
Cma19g00162 209 PANTHER - 81 207 - -
Cma19g00162 209 PANTHER CYTOCHROME B5 81 207 - -
Cma19g00162 209 MobiDBLite consensus disorder prediction 1 32 - -
Cma19g00162 209 MobiDBLite consensus disorder prediction 1 27 - -
Cma19g00162 209 SMART Cyt_b5_2 83 156 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01271 Cma-Chr12:9906853 Cma19g00162 Cma-Chr19:1082126 2.53E-18 dispersed
Cma14g01890 Cma-Chr14:13376466 Cma19g00162 Cma-Chr19:1082126 5.06E-65 wgd
Cma17g00107 Cma-Chr17:521732 Cma19g00162 Cma-Chr19:1082126 1.80E-60 wgd
Cma19g00162 Cma-Chr19:1082126 Cma02g01681 Cma-Chr2:9474696 5.57E-88 wgd
Cma19g00162 Cma-Chr19:1082126 Cma06g01226 Cma-Chr6:8175526 2.99E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00162 K23490 - csv:101212882 243.047