Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00176 ATGGGGCCGGGCGTGTTCTTGTCTGGCGCTGCAAGACAGGCCGAGATTCTCAGAAAAGATGGAAATCACTATTTCCAGAAGGGCCGGATTGGAGCCGCCATTGAAGCCTATACCGAGGCGATTACGCTATGTCCGAATGTTCCTGTGTATTTGACGAACCGTGCTTTGTGTCATCGCAAGCGGAATGATTGGAAGAAGGTGGAGGAGGACTGTCGGAGAGCTATTCAGCTCGACAACAATTCTGTCAAGGCACATTACATGGTAGGATTAGCATTAATACAAAATAAAGACTATCCTGAAGGAATCAAGCATTTGGAGAAGGCTTTGGATCTTGGTAGAGGTGCAAATCAAAAGAGTTATATGGTAGAGGAGATATGGCAGGAGCTTGCAAATGCAAAATACAGGGAGTGGGAACAAGCATCCACCAAACGTTCATGGGAATTGCAGACCTTGAAAGAGGCTTGTGAGGCTGCCCTTGAACAAAAATACTTCCTTGACCAGTCTGAACCAGAAGGGTTCGTAGATCAAGCCGAAAGCGCTCATCGGGAACAATTAAACTCTCTAAGAAGTGTGTTTGAAAACTATGCCGTGGCTGATGCGCCATCTGAGGTCCCCGATCATCTTTGTTGTAAAATTACGCTCGATATTCTTCGTGATCCCGTTATTACTCCGAGCGGGGTTACATATGAGAGAGCAGTGATCCTCGACCATTTTCGAAAGGTTGGTAACTTCGATCCCATAACGCGGGAGCTACTCGACGAGTCTCAGCTAGTACCGAACTTAGCCATAAAGGAAGCTGTACAAGCATTTCTAGATAAACATGGATGGGCTTACAATTCAAATTAA 846 45.98 MGPGVFLSGAARQAEILRKDGNHYFQKGRIGAAIEAYTEAITLCPNVPVYLTNRALCHRKRNDWKKVEEDCRRAIQLDNNSVKAHYMVGLALIQNKDYPEGIKHLEKALDLGRGANQKSYMVEEIWQELANAKYREWEQASTKRSWELQTLKEACEAALEQKYFLDQSEPEGFVDQAESAHREQLNSLRSVFENYAVADAPSEVPDHLCCKITLDILRDPVITPSGVTYERAVILDHFRKVGNFDPITRELLDESQLVPNLAIKEAVQAFLDKHGWAYNSN 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1161960 1167623 + CmaCh19G001760.1 Cma19g00176 314864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00176 281 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Cma19g00176 281 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Cma19g00176 281 SUPERFAMILY TPR-like 13 134 IPR011990 GO:0005515
Cma19g00176 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Cma19g00176 281 ProSiteProfiles TPR repeat profile. 14 47 IPR019734 GO:0005515
Cma19g00176 281 PANTHER OS08G0113300 PROTEIN 9 280 - -
Cma19g00176 281 SMART tpr_5 82 115 IPR019734 GO:0005515
Cma19g00176 281 SMART tpr_5 48 81 IPR019734 GO:0005515
Cma19g00176 281 SMART tpr_5 14 47 IPR019734 GO:0005515
Cma19g00176 281 Pfam Tetratricopeptide repeat 24 46 IPR019734 GO:0005515
Cma19g00176 281 Gene3D Tetratricopeptide repeat domain 8 144 IPR011990 GO:0005515
Cma19g00176 281 CDD RING-Ubox_CHIP 204 270 IPR045202 -
Cma19g00176 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Cma19g00176 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 50 108 - -
Cma19g00176 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Cma19g00176 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Cma19g00176 281 SUPERFAMILY RING/U-box 195 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00176 Cma-Chr19:1161960 Cma09g00793 Cma-Chr9:3855392 2.96E-12 dispersed
Cma19g00176 Cma-Chr19:1161960 Cma02g01666 Cma-Chr2:9420767 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00176 K09561 - csv:101215457 514.612