Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00177 ATGGAAGCACAGGAAAATTGCAGCGTTCTACAAGTATTGTCGGCTCTTTCTGTTCATGCTGCAGTGATCGTCGCTTCCTCTCCGATCTTGATGGCGAAAACGGGGGTGTTTGATTCTGATCCTACAGTCATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACAGAGACTTATCGATGCTATAATTGATGATGATAATTGCTCTACCGACACCATCGATCATGCTAAAGAGATTATTTCTGCGCTCAAGGAGTTGAAACTTAGGAAGAGATCACGCTCTTCTAATCGTTACGAGAATCTCATTTGCCCTGATGAATTTCGTTGTCCGCTTTCTAGGGAGCTCATGAGAGATCCTGTCGTTGTGTCTACTGGCGAGACATATGACAGACCCTTCATTCATAAATGGTTAAGATCAGGAAACCGAACATGTCCGAGAACTCAGCAAGTTCTTTCGCACACGAACCTCACTCCCAATCACTTGATTCGTGAAATTATATCTCAGTGGTGTACCAGTAGGGGAATTGAGTTGCAAGATCGTGTCCGTGTCCACTGTCTTGATGATGATGTGATAACTGAGGCTGATAGAGACCGTTTTCTCACACTAATAGAGAATATGTCTATGACAATATCTGAACAGAAAGCAGCTGCTAAGGAGCTTCGTATGTTGACGAAGAGAATGCCCTCATTTCGAGCGCTTTTTGGCGAGTCCCTTGATGCCATCTCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTAGTGTTCACGCGGATCTGCAAGAGGATGTGATCACAACCCTCTTGAATCTGTCGATCCATGACAACAACAAGAAGCTTGTAGCTGAAACTCCCAATGTAATACCGCTTCTAAAGGAAGCATTGAGGTCAGGAACCATGGAAACGAGGAGCAATGCAGCTGCAGCCCTATTTACTCTGTCAGCTCTTGATTCGAACAAAGCACTCATTGGAAAATCTGGTGCCTTGAAGCCCCTTATTGACCTTTTAGACGAGGGGCATCCTTTATCTATCAAGGATGCTGCTTCAGCCATATTTAATCTTTGTATACTTCATGAAAATAAAGCAAGAGCTGTGCGAGATGGTGCAGTTCGAGTGCTTCTGAAAAAGATTATGAACCAAATGCATGTTGATGAACTGTTGGCTATTCTTGCCATGCTTTCAAGCCATCAAAAGGCCGTCGAAGAAATCGGAGAGCTTGGAGCTGTCCCTTCCTTATTCAGAATTATCAGGGAAAGTTCTTGTTCTCGTAACAAGGAGAATTGCATTGTGATCATCCATGCTATCTGCTTATATGATCGAACCAAGTGGAAGGATATGAAGGAGGAGGAGAAATGGTATCGAACGATCTCCGAACTCGCTAAGAATGGGACTTCAAGGGCCAAGAGAAAGGCCAGTGGCATACTTGAAAGACTAAACAGGGCAGTTAATATGACCCATACCGCGTAA 1467 44.17 MEAQENCSVLQVLSALSVHAAVIVASSPILMAKTGVFDSDPTVMGKATELKRELQRLIDAIIDDDNCSTDTIDHAKEIISALKELKLRKRSRSSNRYENLICPDEFRCPLSRELMRDPVVVSTGETYDRPFIHKWLRSGNRTCPRTQQVLSHTNLTPNHLIREIISQWCTSRGIELQDRVRVHCLDDDVITEADRDRFLTLIENMSMTISEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSSVHADLQEDVITTLLNLSIHDNNKKLVAETPNVIPLLKEALRSGTMETRSNAAAALFTLSALDSNKALIGKSGALKPLIDLLDEGHPLSIKDAASAIFNLCILHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSSHQKAVEEIGELGAVPSLFRIIRESSCSRNKENCIVIIHAICLYDRTKWKDMKEEEKWYRTISELAKNGTSRAKRKASGILERLNRAVNMTHTA 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1168183 1173326 - CmaCh19G001770.1 Cma19g00177 314865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00177 488 Pfam U-box domain 103 172 IPR003613 GO:0004842|GO:0016567
Cma19g00177 488 Gene3D - 238 383 IPR011989 -
Cma19g00177 488 PANTHER U BOX DOMAIN-CONTAINING 35 486 - -
Cma19g00177 488 SUPERFAMILY ARM repeat 211 478 IPR016024 -
Cma19g00177 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 175 IPR013083 -
Cma19g00177 488 ProSiteProfiles U-box domain profile. 101 175 IPR003613 GO:0004842|GO:0016567
Cma19g00177 488 SMART Ubox_2 105 168 IPR003613 GO:0004842|GO:0016567
Cma19g00177 488 Gene3D - 384 486 IPR011989 -
Cma19g00177 488 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 35 486 - -
Cma19g00177 488 SUPERFAMILY RING/U-box 99 178 - -
Cma19g00177 488 CDD RING-Ubox_PUB 106 148 IPR045210 -
Cma19g00177 488 SMART arm_5 316 356 IPR000225 GO:0005515
Cma19g00177 488 SMART arm_5 274 315 IPR000225 GO:0005515
Cma19g00177 488 Pfam Armadillo/beta-catenin-like repeat 319 355 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00984 Cma-Chr12:7831286 Cma19g00177 Cma-Chr19:1168183 1.21E-117 dispersed
Cma19g00177 Cma-Chr19:1168183 Cma18g00906 Cma-Chr18:7786736 3.88E-90 dispersed
Cma19g00177 Cma-Chr19:1168183 Cma02g01665 Cma-Chr2:9410473 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00177 - - csv:101215688 776.163