Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00185 ATGCATCACCCCCACACTCATAACCAATCAAATTACTCTTTGATTAAACCTTTTCTCTCTCTGTTTGGGGAGAGAGAAAATGAAAGAAAAGAAAAGAAAAGAAAAGAAAAAAAAGTGCCCCACACAAATCTGCAACCCATTACTGCAAACCTGTCTCCCCCAATCTTCCTCTGTTTCTTCACTGCTCTGAGGAACAATCCCACAATGTTTGATTCCTTCTTCTTCTTCTTCTTCTTCTTGATTATATTCCCTCACTGTAAATCTTCTGAAATTTCCGCCGGTGGTCGGAGATTGCTTCACCAGCCATTTTTTCCGATTGATTCTGCTCCTCCGGCGGAGCAGCCATCGCCTCTGGTACCACCACCGCCGAATCCCAAATACCCATTTTCAACTACCCCTCCTGCAACACCTGATGGGTCACCATTCTTTCCGACGTATCCTGCAACTCCACCTCCTCCAGCGCCGGCAAGTTTAGCCTCGTTTCCGGCTAATATTTCTTCTCTGAATCTACCTCATTCGTCTGGTTACAGTTCCAAGAAGGTTGTTCCGTTGGTTATTGCTGGGGTTGTTTCCGCCGTCTTGGTAATCTGCATTGTAGGGTTTTTGTTCTGGCGGCGGCGGCGGGGTGGTCGTGGATTGGGGGATGGAAAGACGTATAGATCGGAAGATAGTAGCCGGTTGTCTCTGGTTCAGAATGTTGAAGTCGGTAATGGAATCCCTAAGTTGAGAAATCCGTCGGCTACTAGCTCTGAGTTTCTGTATTTAGGTACTCTTGTAAGCACGAGAGGGATCGACGAACGTTCCGTTGGCGGAGCTCGTGCTGTTGGTTCTAGGCCGTTGGATTCGCCGGAGCTTCATCCGCTTCCGCCGCTGAATCTAGGTCGGAATGAGAAGAAAAATCGCGAAAATGGAGAGGAGAAATCGATTGGAGATGAAGAGGAAGAGGAATTTTACTCTCCGAAAGGTTCTCTCGGCGCTATTGGATCGGGATCTCGACGAGTTCTCGCAACAATGGCGGCGGAAGATTTGCTTGGCAAAACCAGCGATTCGAGCTCGACTTCGTGTTCTACATCTAGCGGTTCCATTTCGCCGGCGAGATCATGTTCTAAGAGTCTCTCTCTATCTCCACCGGCGAGTATGAGCCCTAGGAGATCCGTTCAACATGCGGAGCAGGTTGCCCACGGCGGAGGCGAATCAGACGGCGGCGTTAAATCTCATTGTCCATCTCCAATGCGTTTAGCGACGGAGAAGAACTCCACCGCATCTTCTTCCCGGAGATTTTCAAATGCTTCAATTCTCAGTGCGATTTTCCCGAATTTATCAACCGATAAGGATTTAGTTCATCGGAATTCAGATCCAGGCGAGCAGTTTCCTTCTTCTCCTTGTTTATTTCCACTTTCAGATGGAATTTTAGGGCAAATTCAGATTCAATTGCCGATAGTTTCAAACGTTCCTGATTCGGATTCCGATGCAAAACTTAAGCAATTTCCTTACTCATTTACTTCATCTTCACCTTCATCGTCACCGGAACGAGTAGTTTTGGACTCTTCTCCGTCAACTACCTCCATTATTTCCGATCAAACCAGGTCGTCTCCACCATCACCAGAGAGAATTCTCAACCATTTTGATCAAGATGTGAAATCTTCTTCTAATGTGGCTCCTCCACCACCTCCACCACCGCCTCCGCCACCACCACCACCACCACCACTGGTAGCACTACCAGGACGCAGAGAAATGCCGATTTCTCCTAAAACACCAATGGATCAATCCATTACAAAGGCGGCTCCTCCATTAGTGCCTCCATTAAGGCCATTTCAAATGAAGAATCTGAAAAATGTATCACCAATTCAGCTGCCATCTTGCAAAAGCAATGGTGAATCATCTGTAGATACCCCCAAGCCCAAATTGAAGCCATTGCATTGGGATAAAGTAAGGGCTAGCTCTGATCGTGAGATGGTGTGGGATCAACTCAGATCAAGCTCTTTTAAAGTGAATGAGGAAATGATTGAAACTCTGTTTGTTGTGAACACTTCCAACTCGAAGGAGACAACTCCACGCCCTGTGTTTCCGACACCTAACCAAGAGATCGGAGTTCTCGATCCGAAGAAGTCGCAGAACATTGCGATTGCATTACGAGCGCTTAATGTGACGATAGAAGAAGTTTGTGATGCCCTTTTAGAAGGTAATGCAGAAGCACTTGGAATAGAGCTACTTGAAAGCTTATTGAAAATGGCTCCAACAAAAGAAGAAGAACGCAAGCTAAAGGCATCAAAGGATGTCTCACCTACAAAATTTGGCCCAGCTGAGAAGTTTTTGAAGGCAATCCTTGATGTTCCTTTTGCATTCAAAAGGGTGGATGCAATGCTTTACATGGCAAACTTCGAGTCCGAGATCGAGTACCTAAAGAAATCATTCGAAAATCTCGAGACTGCTTGTGAAGAATTGAGGAACAGCAGGATGTTCTTGAAACTTTTAGAAGCTGTTCTCAAGACAGGGAATCGTATGAACGTTGGCACGAACCGTGGCGATGCCCACGCGTTCAAACTCGACACGCTTTTAAAGCTTGTTGATGTCAAGGGTGCAGATGGAAAAACCACTCTTCTACATTTCGTCGTACAAGAAATCATAAGAAGCGAAGGTGCTCGTCTTTACAACACGAGTTCTCCAAACTCGAACCCGAATGACGATATCAAATGCAGGAAGCTCGGTCTGCAAGTTGTTTCTAGTCTCAGCTCAGAGCTCACCAACGTAAAGAAGGCTGCTTCGATGGATTCCGACGTGCTCAATGGTGAGGTTGTTAAGCTTTCGAGAGGACTCAACAATATTAGGGATTCTCTACGTCTTAACGAAGCAGATGGACGAAACGATAGCACGGAAAAGTTCTCATACTCGATGAGTAGATTCTTGAAAATGGCAGAAGAGGAACTGATTAGAATCCAAGCTCAGGAAAGTGTTGCATTATCTCTAGTAAAGGAGATCACTGAGTACTTCCATGGCAACTCTGCCAAGGAAGAAGCTCATCCATTTCGGATTTTCATGGTGGTTCGAGATTTCCTAACGGTTCTGGACGGAGTATGCAAAGAAGTCGGGACGATAAACGAGCGGACGATCGTGAGTTCGGCTCATAAATTCCCGGTTCCGGTAAATCCAACATTACCACAAGCATTTCAAGCTCATCATAGAGTGCAGAAATACAGTTCTTCTGATGAAGAATGA 3216 45.93 MHHPHTHNQSNYSLIKPFLSLFGERENERKEKKRKEKKVPHTNLQPITANLSPPIFLCFFTALRNNPTMFDSFFFFFFFLIIFPHCKSSEISAGGRRLLHQPFFPIDSAPPAEQPSPLVPPPPNPKYPFSTTPPATPDGSPFFPTYPATPPPPAPASLASFPANISSLNLPHSSGYSSKKVVPLVIAGVVSAVLVICIVGFLFWRRRRGGRGLGDGKTYRSEDSSRLSLVQNVEVGNGIPKLRNPSATSSEFLYLGTLVSTRGIDERSVGGARAVGSRPLDSPELHPLPPLNLGRNEKKNRENGEEKSIGDEEEEEFYSPKGSLGAIGSGSRRVLATMAAEDLLGKTSDSSSTSCSTSSGSISPARSCSKSLSLSPPASMSPRRSVQHAEQVAHGGGESDGGVKSHCPSPMRLATEKNSTASSSRRFSNASILSAIFPNLSTDKDLVHRNSDPGEQFPSSPCLFPLSDGILGQIQIQLPIVSNVPDSDSDAKLKQFPYSFTSSSPSSSPERVVLDSSPSTTSIISDQTRSSPPSPERILNHFDQDVKSSSNVAPPPPPPPPPPPPPPPPLVALPGRREMPISPKTPMDQSITKAAPPLVPPLRPFQMKNLKNVSPIQLPSCKSNGESSVDTPKPKLKPLHWDKVRASSDREMVWDQLRSSSFKVNEEMIETLFVVNTSNSKETTPRPVFPTPNQEIGVLDPKKSQNIAIALRALNVTIEEVCDALLEGNAEALGIELLESLLKMAPTKEEERKLKASKDVSPTKFGPAEKFLKAILDVPFAFKRVDAMLYMANFESEIEYLKKSFENLETACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRSEGARLYNTSSPNSNPNDDIKCRKLGLQVVSSLSSELTNVKKAASMDSDVLNGEVVKLSRGLNNIRDSLRLNEADGRNDSTEKFSYSMSRFLKMAEEELIRIQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLTVLDGVCKEVGTINERTIVSSAHKFPVPVNPTLPQAFQAHHRVQKYSSSDEE 1071
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1217972 1222891 - CmaCh19G001850.1 Cma19g00185 314873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00185 1071 MobiDBLite consensus disorder prediction 500 591 - -
Cma19g00185 1071 MobiDBLite consensus disorder prediction 500 537 - -
Cma19g00185 1071 MobiDBLite consensus disorder prediction 551 574 - -
Cma19g00185 1071 PANTHER FORMIN-LIKE PROTEIN 1 544 1071 - -
Cma19g00185 1071 PANTHER FORMIN-LIKE PROTEIN 1 73 466 - -
Cma19g00185 1071 Pfam Formin Homology 2 Domain 628 1022 IPR015425 -
Cma19g00185 1071 SUPERFAMILY Formin homology 2 domain (FH2 domain) 558 1035 - -
Cma19g00185 1071 Coils Coil 791 818 - -
Cma19g00185 1071 SMART it6_source 626 1037 IPR015425 -
Cma19g00185 1071 MobiDBLite consensus disorder prediction 112 134 - -
Cma19g00185 1071 Gene3D Formin, FH2 domain 624 1032 IPR042201 -
Cma19g00185 1071 PANTHER FORMIN-RELATED 73 466 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cma19g00185 1071 PANTHER FORMIN-RELATED 544 1071 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cma19g00185 1071 MobiDBLite consensus disorder prediction 345 424 - -
Cma19g00185 1071 ProSiteProfiles Formin homology-2 (FH2) domain profile. 626 1048 IPR015425 -
Cma19g00185 1071 MobiDBLite consensus disorder prediction 269 325 - -
Cma19g00185 1071 MobiDBLite consensus disorder prediction 345 386 - -
Cma19g00185 1071 MobiDBLite consensus disorder prediction 617 637 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00921 Cma-Chr9:4588568 Cma19g00185 Cma-Chr19:1217972 1.90E-117 dispersed
Cma11g01134 Cma-Chr11:6466353 Cma19g00185 Cma-Chr19:1217972 1.38E-116 dispersed
Cma19g00185 Cma-Chr19:1217972 Cma10g01113 Cma-Chr10:7607891 6.22E-113 dispersed
Cma02g00531 Cma-Chr2:2928979 Cma19g00185 Cma-Chr19:1217972 7.20E-169 transposed
Cma04g01882 Cma-Chr4:9679017 Cma19g00185 Cma-Chr19:1217972 9.07E-19 transposed
Cma19g00185 Cma-Chr19:1217972 Cma02g01659 Cma-Chr2:9391890 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00185 - - cmos:111464076 1689.47