Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma19g00192 | ATGTCTCTCCTCAGTAGATTCTTTTACAGAAGACCCCCCGATGGGTTGCTGGAATTTGTTGAACGAGTATATATTTTTGACTCCTGCTTTTCTACTGAAGTATTGCCTGATGATATGTACCAAATATATCTGCACGAAATCATAAATGAATTACATGAAGAATTCCCGGAGTCCTCTTTTCTTGCTTTTAATTTTCGTGAAGGGGAGAAACGGAGCCAATTTTCACAAATGTTGTGCGAGTATGATGTCACTGTGATGGATTATCCTCGACAATATGAAGGTTGCCCGCTTCTACCGCTGTCGTTAATACAGCACTTCCTCCATGTTTGTGAAAGTTGGCTTCTGCTAGGTAACCAACAAAATGTCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTGTTAGCATTCCTTTTGGCTAGCTTTTTGATATTTAGAAAACTGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTTCATCGAGAAGCCCCCAAAGGGTTTTTGCAGCTCTTGTCACCATTAAATCCATTCCCATCGCAGCTCCGCTACTTGCAATATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTTTCTTTAGATTGTGTAATTCTTCGTGGCATTCCGGGTTTCGATTCTCAGAATGGCTGCCGACCAGTTGTTCGTATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTTTCCACGCAGATGATTTTCTCTATGCCCAAGAAGAACAAGGCCCTCCGTCACTACCATCAGGCAGAGTGTGATGTGATTAAAATAGACGTTCAGTGTTTAGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAGTCAGAACATGAAAGGGAAGTTATGATGTTTCGTATTATGTTCAATACAGCGTTTATTCGATCAAACATACTGATGCTAACCTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCTGAGGTTCTGTTTGGAGAGATGGAAAGCATCTCCCCTCCAAGGGCTCCAACCACAATTTTGAATGGTGAAGAGAAAGGTGGATTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTTGAGTGGATTGATAACAATGATGATGCTGCCTTGTGGCTACTCAAGAATCTTTCTGCCTTGAGTGATGTGAAGGAATTGTCAAGATTGCAAAATAAAACAAGTTCATACTCCTCACCAGTGGATTCTGAAGAGGAAAATAATACATCTAGCACTGCCGATAGTTTAGATGAAGTATTTGATACTATTACAAGGCCTGTGGTTGATTCAACTTCTACCAATTTTACAATTCCAGCTACGGTACATTCTTCTGAATTATTGTCCGACAAGATTGGTGCTAATGAAGTGAATATTTCATCAGAGTCTCCTCAACTTTTTGATGAATTTCAAGATGAGATATCTTCGAATAAAGAACCTCCATTAACTTCTTTTGGCTCCTCAACCCCTCCTATAAGTTCTTCTTTGATGTCATCGCCACTGTTGCCTCCATCTAATCTACCATGTACTAATGCTAGTGGAGAACTTGTCTCAAATAAAATGACACCCACTGTTGAAGTAATTCCTCCTCCACCACCACCGCCGCCGCCACCTTTTTCCCTGTCTCATAATGAACCTCATGTAGAAACTTCCATCAGTTCAAATTTGACGACCATAACAATGCATGGGAGACCCCCTCCACCACCTCCACCTCCACCTCCACCTCAATATACTACTGGTACCAATCCTGTTGAAGCCTCTTTGACTCATTCACTGTCGCTTGTTCCTAAATCTTCGGGTGCTCCTCCACCCCCACCTCCCCCTCCCCCTCCACAAGTTGTTGGTCCACCTCCACCTATTTCAAATTCCTCCAGTTCTCCTCCACTTCCTCCTCCACCTCCGCCTCCAGTTCCAAAATCTTTTGGTACTCCTCCACCTCTAGTTCCAAAATCTTCTAGTGCTCCTCCACCTCCGCCTCCGCTTCTAAAATCTTCTAGTGCTCCTCCACCTCCACCTCCCCCTCCCCCTCCCCTTCCAAAATCTTCTAGTGCTCCTCCACCTTCACCTCCACCTCCACCTCCACCTCCAAAACTTTCTGGTGCTCCACCTCCACCACCACCTCCAAAACTTTCTGGTGCTCCTCCACCTCCACCTCCACCTCCACCTCCAAAAATTTCTGGTGCTCCGCCTCCGCCTCCGCCTCCACCTCCAAAACTTTCTGGTGCTCCTCCACCTCCGCCTCCGCCTCCTAAACTTTCTGGTGCTCCTCCACCTCCACCTCCACCTCCACAATCAAATCGCGGTGCACCGGTTCCACCTCCTCCACCACCAAGACCTCCCAGTGTTGAGCTACCGAGTCATGGTACTAAACCAACTAGACCTCCTCCACCTCCTCCACCGACAAAGTCCTCTAATGCTCACCCTCCGTCAAGTCATGGTGCTACACCAATGCCACCCCCTCCCCCCGGATCAAGAGGGCCAAATGTACCACCACCACCTCCTCCTTCTGTTGGAAGAGGCAAAGCTTCTCTAGGGTCAACAACTCAAGGAAGAGGCCGTCTTGCTACTGGAGTTGTAAATGCTCCAAAGAAAACCACTTTAAAACCATTGCACTGGGTAAAAGTTACTCGAGCAATGCAAGGAAGTCTGTGGGCTGATTCACAAAAGCAGGAAAATCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGTAGTAAAGGTGGAGGACGACGTGGTTCCAATATCAACAAACCGGAAAAAGTGCAACTGATTGACCTGCGGAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACCAGGGAAGAGATGGAAACATTGAAGAATTATACAGGTGGCAGACAAATGCTAGGAAAGTGTGAGCAGTTTTTTCTCGAGCTAATGAAGGTCCCACGAATAGAGTCAAAGTTACGGGTGTTTGCTTTCAAAATAACCTTTTCTAGTCAGGTGAGTGATTTGAGATACAACTTGAACACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATAATGCAAACAATTCTGACACTGGGAAATGCGTTAAACCAGGGCACTGCTCGAGGCTCTGCAATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTGTGTAAGCTCCTTGCAGAAAAAATGGCGGAATTACTTGATTTTGACAAGGACCTTGTTCATTTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAGGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGATGGAGCAAGAGCTAACTGCTTCAGAAAATGACGGTGCTATCTCTATTGGTTTCCAGAAGGTGCTGAAGATTTTTCTTGATACGGCTGAAGCTGAAGTAAGGGCACTTATTTCCTTATATTCTGAAGTGGGGAGAAACGCAGATTCGCTATCCCAGTACTTCGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACTCAAATTTTGATAGTCTTCGTTAAGATGTTCAAGAAGTCTCGAGAAGAAAACGAAAGACAGGCTGATGCTGAAAAGAGAAAAATAGAGAAGGAAGCCATGAAAGAACGAAGTTCAGTTAATGCAAAGTGA | 3831 | 44.56 | MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDDMYQIYLHEIINELHEEFPESSFLAFNFREGEKRSQFSQMLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLHVCESWLLLGNQQNVILLHCERGGWPLLAFLLASFLIFRKLHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGIPGFDSQNGCRPVVRIFGRNLFSKGGLSTQMIFSMPKKNKALRHYHQAECDVIKIDVQCLVQGDVVLECSHLESEHEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEMESISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGVEWIDNNDDAALWLLKNLSALSDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSLDEVFDTITRPVVDSTSTNFTIPATVHSSELLSDKIGANEVNISSESPQLFDEFQDEISSNKEPPLTSFGSSTPPISSSLMSSPLLPPSNLPCTNASGELVSNKMTPTVEVIPPPPPPPPPPFSLSHNEPHVETSISSNLTTITMHGRPPPPPPPPPPPQYTTGTNPVEASLTHSLSLVPKSSGAPPPPPPPPPPQVVGPPPPISNSSSSPPLPPPPPPPVPKSFGTPPPLVPKSSSAPPPPPPLLKSSSAPPPPPPPPPPLPKSSSAPPPSPPPPPPPPKLSGAPPPPPPPKLSGAPPPPPPPPPPKISGAPPPPPPPPPKLSGAPPPPPPPPKLSGAPPPPPPPPQSNRGAPVPPPPPPRPPSVELPSHGTKPTRPPPPPPPTKSSNAHPPSSHGATPMPPPPPGSRGPNVPPPPPPSVGRGKASLGSTTQGRGRLATGVVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKNYTGGRQMLGKCEQFFLELMKVPRIESKLRVFAFKITFSSQVSDLRYNLNTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMAELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKMEQELTASENDGAISIGFQKVLKIFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADAEKRKIEKEAMKERSSVNAK | 1276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 1268107 | 1278261 | - | CmaCh19G001920.1 | Cma19g00192 | 314880 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 406 | 427 | - | - | |
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 557 | 574 | - | - | |
Cma19g00192 | 1276 | ProSiteProfiles | C2 tensin-type domain profile. | 200 | 339 | IPR014020 | - | |
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 923 | 937 | - | - | |
Cma19g00192 | 1276 | Pfam | Formin Homology 2 Domain | 875 | 1245 | IPR015425 | - | |
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 611 | 818 | - | - | |
Cma19g00192 | 1276 | Gene3D | - | 197 | 342 | - | - | |
Cma19g00192 | 1276 | Pfam | C2 domain of PTEN tumour-suppressor protein | 199 | 337 | IPR014020 | - | |
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 575 | 592 | - | - | |
Cma19g00192 | 1276 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 870 | 1270 | IPR015425 | - | |
Cma19g00192 | 1276 | PANTHER | FORMIN-J | 1 | 668 | - | - | |
Cma19g00192 | 1276 | PANTHER | FORMIN-J | 785 | 1272 | - | - | |
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 536 | 875 | - | - | |
Cma19g00192 | 1276 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 883 | 1264 | - | - | |
Cma19g00192 | 1276 | Coils | Coil | 1151 | 1178 | - | - | |
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 923 | 943 | - | - | |
Cma19g00192 | 1276 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 200 | 339 | IPR035892 | - | |
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 1247 | 1276 | - | - | |
Cma19g00192 | 1276 | Coils | Coil | 1245 | 1268 | - | - | |
Cma19g00192 | 1276 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 20 | 187 | IPR029021 | - | |
Cma19g00192 | 1276 | SMART | PTEN_C2_2 | 198 | 338 | IPR014020 | - | |
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 538 | 555 | - | - | |
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 593 | 609 | - | - | |
Cma19g00192 | 1276 | Gene3D | Protein tyrosine phosphatase superfamily | 16 | 191 | IPR029021 | - | |
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 488 | 509 | - | - | |
Cma19g00192 | 1276 | Gene3D | Formin, FH2 domain | 872 | 1256 | IPR042201 | - | |
Cma19g00192 | 1276 | SMART | it6_source | 609 | 1276 | IPR015425 | - | |
Cma19g00192 | 1276 | MobiDBLite | consensus disorder prediction | 825 | 851 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma13g01093 | Cma-Chr13:8230983 | Cma19g00192 | Cma-Chr19:1268107 | 2.32E-109 | dispersed | |
Cma19g00192 | Cma-Chr19:1268107 | Cma02g01653 | Cma-Chr2:9362611 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma19g00192 | - | - | cmos:111464075 | 1145.57 |