Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00192 ATGTCTCTCCTCAGTAGATTCTTTTACAGAAGACCCCCCGATGGGTTGCTGGAATTTGTTGAACGAGTATATATTTTTGACTCCTGCTTTTCTACTGAAGTATTGCCTGATGATATGTACCAAATATATCTGCACGAAATCATAAATGAATTACATGAAGAATTCCCGGAGTCCTCTTTTCTTGCTTTTAATTTTCGTGAAGGGGAGAAACGGAGCCAATTTTCACAAATGTTGTGCGAGTATGATGTCACTGTGATGGATTATCCTCGACAATATGAAGGTTGCCCGCTTCTACCGCTGTCGTTAATACAGCACTTCCTCCATGTTTGTGAAAGTTGGCTTCTGCTAGGTAACCAACAAAATGTCATTCTTCTCCACTGTGAGAGGGGAGGTTGGCCACTGTTAGCATTCCTTTTGGCTAGCTTTTTGATATTTAGAAAACTGCACAGTGGTGAGAGGAAAACTCTTGAAATTGTTCATCGAGAAGCCCCCAAAGGGTTTTTGCAGCTCTTGTCACCATTAAATCCATTCCCATCGCAGCTCCGCTACTTGCAATATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTTTCTTTAGATTGTGTAATTCTTCGTGGCATTCCGGGTTTCGATTCTCAGAATGGCTGCCGACCAGTTGTTCGTATTTTTGGGAGGAATCTTTTTAGTAAGGGTGGGCTTTCCACGCAGATGATTTTCTCTATGCCCAAGAAGAACAAGGCCCTCCGTCACTACCATCAGGCAGAGTGTGATGTGATTAAAATAGACGTTCAGTGTTTAGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAGTCAGAACATGAAAGGGAAGTTATGATGTTTCGTATTATGTTCAATACAGCGTTTATTCGATCAAACATACTGATGCTAACCTCTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCTGAGGTTCTGTTTGGAGAGATGGAAAGCATCTCCCCTCCAAGGGCTCCAACCACAATTTTGAATGGTGAAGAGAAAGGTGGATTACCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTTGAGTGGATTGATAACAATGATGATGCTGCCTTGTGGCTACTCAAGAATCTTTCTGCCTTGAGTGATGTGAAGGAATTGTCAAGATTGCAAAATAAAACAAGTTCATACTCCTCACCAGTGGATTCTGAAGAGGAAAATAATACATCTAGCACTGCCGATAGTTTAGATGAAGTATTTGATACTATTACAAGGCCTGTGGTTGATTCAACTTCTACCAATTTTACAATTCCAGCTACGGTACATTCTTCTGAATTATTGTCCGACAAGATTGGTGCTAATGAAGTGAATATTTCATCAGAGTCTCCTCAACTTTTTGATGAATTTCAAGATGAGATATCTTCGAATAAAGAACCTCCATTAACTTCTTTTGGCTCCTCAACCCCTCCTATAAGTTCTTCTTTGATGTCATCGCCACTGTTGCCTCCATCTAATCTACCATGTACTAATGCTAGTGGAGAACTTGTCTCAAATAAAATGACACCCACTGTTGAAGTAATTCCTCCTCCACCACCACCGCCGCCGCCACCTTTTTCCCTGTCTCATAATGAACCTCATGTAGAAACTTCCATCAGTTCAAATTTGACGACCATAACAATGCATGGGAGACCCCCTCCACCACCTCCACCTCCACCTCCACCTCAATATACTACTGGTACCAATCCTGTTGAAGCCTCTTTGACTCATTCACTGTCGCTTGTTCCTAAATCTTCGGGTGCTCCTCCACCCCCACCTCCCCCTCCCCCTCCACAAGTTGTTGGTCCACCTCCACCTATTTCAAATTCCTCCAGTTCTCCTCCACTTCCTCCTCCACCTCCGCCTCCAGTTCCAAAATCTTTTGGTACTCCTCCACCTCTAGTTCCAAAATCTTCTAGTGCTCCTCCACCTCCGCCTCCGCTTCTAAAATCTTCTAGTGCTCCTCCACCTCCACCTCCCCCTCCCCCTCCCCTTCCAAAATCTTCTAGTGCTCCTCCACCTTCACCTCCACCTCCACCTCCACCTCCAAAACTTTCTGGTGCTCCACCTCCACCACCACCTCCAAAACTTTCTGGTGCTCCTCCACCTCCACCTCCACCTCCACCTCCAAAAATTTCTGGTGCTCCGCCTCCGCCTCCGCCTCCACCTCCAAAACTTTCTGGTGCTCCTCCACCTCCGCCTCCGCCTCCTAAACTTTCTGGTGCTCCTCCACCTCCACCTCCACCTCCACAATCAAATCGCGGTGCACCGGTTCCACCTCCTCCACCACCAAGACCTCCCAGTGTTGAGCTACCGAGTCATGGTACTAAACCAACTAGACCTCCTCCACCTCCTCCACCGACAAAGTCCTCTAATGCTCACCCTCCGTCAAGTCATGGTGCTACACCAATGCCACCCCCTCCCCCCGGATCAAGAGGGCCAAATGTACCACCACCACCTCCTCCTTCTGTTGGAAGAGGCAAAGCTTCTCTAGGGTCAACAACTCAAGGAAGAGGCCGTCTTGCTACTGGAGTTGTAAATGCTCCAAAGAAAACCACTTTAAAACCATTGCACTGGGTAAAAGTTACTCGAGCAATGCAAGGAAGTCTGTGGGCTGATTCACAAAAGCAGGAAAATCAATCAAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCCTCTGCTTCTGATGGAAGTGGTAGTAAAGGTGGAGGACGACGTGGTTCCAATATCAACAAACCGGAAAAAGTGCAACTGATTGACCTGCGGAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACCAGGGAAGAGATGGAAACATTGAAGAATTATACAGGTGGCAGACAAATGCTAGGAAAGTGTGAGCAGTTTTTTCTCGAGCTAATGAAGGTCCCACGAATAGAGTCAAAGTTACGGGTGTTTGCTTTCAAAATAACCTTTTCTAGTCAGGTGAGTGATTTGAGATACAACTTGAACACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATAATGCAAACAATTCTGACACTGGGAAATGCGTTAAACCAGGGCACTGCTCGAGGCTCTGCAATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTGTGTAAGCTCCTTGCAGAAAAAATGGCGGAATTACTTGATTTTGACAAGGACCTTGTTCATTTAGAAGCTGCCTCTAAGATTCAATTGAAAGCATTGGCTGAGGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGATGGAGCAAGAGCTAACTGCTTCAGAAAATGACGGTGCTATCTCTATTGGTTTCCAGAAGGTGCTGAAGATTTTTCTTGATACGGCTGAAGCTGAAGTAAGGGCACTTATTTCCTTATATTCTGAAGTGGGGAGAAACGCAGATTCGCTATCCCAGTACTTCGGCGAGGATCCAGCTCGGTGCCCCTTTGAGCAAGTGACTCAAATTTTGATAGTCTTCGTTAAGATGTTCAAGAAGTCTCGAGAAGAAAACGAAAGACAGGCTGATGCTGAAAAGAGAAAAATAGAGAAGGAAGCCATGAAAGAACGAAGTTCAGTTAATGCAAAGTGA 3831 44.56 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEVLPDDMYQIYLHEIINELHEEFPESSFLAFNFREGEKRSQFSQMLCEYDVTVMDYPRQYEGCPLLPLSLIQHFLHVCESWLLLGNQQNVILLHCERGGWPLLAFLLASFLIFRKLHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGIPGFDSQNGCRPVVRIFGRNLFSKGGLSTQMIFSMPKKNKALRHYHQAECDVIKIDVQCLVQGDVVLECSHLESEHEREVMMFRIMFNTAFIRSNILMLTSENLDILWDSKERYPKGFRAEVLFGEMESISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGVEWIDNNDDAALWLLKNLSALSDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSLDEVFDTITRPVVDSTSTNFTIPATVHSSELLSDKIGANEVNISSESPQLFDEFQDEISSNKEPPLTSFGSSTPPISSSLMSSPLLPPSNLPCTNASGELVSNKMTPTVEVIPPPPPPPPPPFSLSHNEPHVETSISSNLTTITMHGRPPPPPPPPPPPQYTTGTNPVEASLTHSLSLVPKSSGAPPPPPPPPPPQVVGPPPPISNSSSSPPLPPPPPPPVPKSFGTPPPLVPKSSSAPPPPPPLLKSSSAPPPPPPPPPPLPKSSSAPPPSPPPPPPPPKLSGAPPPPPPPKLSGAPPPPPPPPPPKISGAPPPPPPPPPKLSGAPPPPPPPPKLSGAPPPPPPPPQSNRGAPVPPPPPPRPPSVELPSHGTKPTRPPPPPPPTKSSNAHPPSSHGATPMPPPPPGSRGPNVPPPPPPSVGRGKASLGSTTQGRGRLATGVVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKNYTGGRQMLGKCEQFFLELMKVPRIESKLRVFAFKITFSSQVSDLRYNLNTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMAELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKMEQELTASENDGAISIGFQKVLKIFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADAEKRKIEKEAMKERSSVNAK 1276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1268107 1278261 - CmaCh19G001920.1 Cma19g00192 314880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00192 1276 MobiDBLite consensus disorder prediction 406 427 - -
Cma19g00192 1276 MobiDBLite consensus disorder prediction 557 574 - -
Cma19g00192 1276 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cma19g00192 1276 MobiDBLite consensus disorder prediction 923 937 - -
Cma19g00192 1276 Pfam Formin Homology 2 Domain 875 1245 IPR015425 -
Cma19g00192 1276 MobiDBLite consensus disorder prediction 611 818 - -
Cma19g00192 1276 Gene3D - 197 342 - -
Cma19g00192 1276 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cma19g00192 1276 MobiDBLite consensus disorder prediction 575 592 - -
Cma19g00192 1276 ProSiteProfiles Formin homology-2 (FH2) domain profile. 870 1270 IPR015425 -
Cma19g00192 1276 PANTHER FORMIN-J 1 668 - -
Cma19g00192 1276 PANTHER FORMIN-J 785 1272 - -
Cma19g00192 1276 MobiDBLite consensus disorder prediction 536 875 - -
Cma19g00192 1276 SUPERFAMILY Formin homology 2 domain (FH2 domain) 883 1264 - -
Cma19g00192 1276 Coils Coil 1151 1178 - -
Cma19g00192 1276 MobiDBLite consensus disorder prediction 923 943 - -
Cma19g00192 1276 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Cma19g00192 1276 MobiDBLite consensus disorder prediction 1247 1276 - -
Cma19g00192 1276 Coils Coil 1245 1268 - -
Cma19g00192 1276 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 20 187 IPR029021 -
Cma19g00192 1276 SMART PTEN_C2_2 198 338 IPR014020 -
Cma19g00192 1276 MobiDBLite consensus disorder prediction 538 555 - -
Cma19g00192 1276 MobiDBLite consensus disorder prediction 593 609 - -
Cma19g00192 1276 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Cma19g00192 1276 MobiDBLite consensus disorder prediction 488 509 - -
Cma19g00192 1276 Gene3D Formin, FH2 domain 872 1256 IPR042201 -
Cma19g00192 1276 SMART it6_source 609 1276 IPR015425 -
Cma19g00192 1276 MobiDBLite consensus disorder prediction 825 851 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g01093 Cma-Chr13:8230983 Cma19g00192 Cma-Chr19:1268107 2.32E-109 dispersed
Cma19g00192 Cma-Chr19:1268107 Cma02g01653 Cma-Chr2:9362611 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00192 - - cmos:111464075 1145.57