Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00201 ATGGAATTTTCTACTCGGTCGAGAATGGAGCGGAACTATCCGTATGAGAATGGAGTGATGATGACGAGAGACACGAAGCCAAGACTGAGATGGACAGCTGATCTTCACGACCGTTTTGTAGACGCGGTCACCAAGCTTGGTGGCCCTGAAAAAGCAACTCCCAAGTCTGTGTTAAGATTGATGGGTTTAAAGGGCTTGACTTTGTACCACTTGAAGAGTCATTTACAGAAGTATAGACTTGGACTGCAAACTCGAAAGCAAAATGTGGCTGAGCAAAGGAATCAAAGTAGTGGGACTCTGAGCAACTTCATTGGAGTTGAGGACGATGAGAGAGGGATGAAAATTGCTGAGGCACTAAAATCACATGTTGATGTGCAGAAAATAATACTAGAACAACTTGAGGTACAAAATAAACTACAAATGAGAATAGAAGCTCAAGGAAAATACTTGCAAGATATCTTAGAGAAAGCACAAAAGAGTCTGGCACTTGCCATTAACAGTGACCTTGGTAGTCTTGAAAGCACAGGAATGCAGCTATTAGGCTTTGACGTGGCTCTGTCAGATCAAATGGAAAAAAGTAAGAAACAAGAAATGAGAGGAAGCATGACGACTGTAAACGATACTTGTAAGAAGACGGGCGACTCACCCATCCAGATGTGCAAAGTGGAAGCTGGAGAAGAAGCCACAAACGAGTTTAATGTTGAAAGGAATATGATCAACTTTGATTTGAATTCAAAAGGTGGCTATGATTACAGTTCGAATGGGGCTGAAGTACTTGAGGCCAATGTGCTTCCTTGCTCGAGGATACAGCTTTTGAAGCTTCTTATCCTCCACCTATTTCGAAGTTTGTCGAGCAACATTCAAAGAATCTATGATGTCTACAAAATGGAGTGGGGACGAGATCAATCCTCGTTCTTATAA 921 42.02 MEFSTRSRMERNYPYENGVMMTRDTKPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGLQTRKQNVAEQRNQSSGTLSNFIGVEDDERGMKIAEALKSHVDVQKIILEQLEVQNKLQMRIEAQGKYLQDILEKAQKSLALAINSDLGSLESTGMQLLGFDVALSDQMEKSKKQEMRGSMTTVNDTCKKTGDSPIQMCKVEAGEEATNEFNVERNMINFDLNSKGGYDYSSNGAEVLEANVLPCSRIQLLKLLILHLFRSLSSNIQRIYDVYKMEWGRDQSSFL 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1331608 1338370 - CmaCh19G002010.1 Cma19g00201 314889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00201 306 SUPERFAMILY Homeodomain-like 25 83 IPR009057 -
Cma19g00201 306 Pfam MYB-CC type transfactor, LHEQLE motif 113 160 IPR025756 -
Cma19g00201 306 Gene3D - 25 82 - -
Cma19g00201 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 255 - -
Cma19g00201 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 26 80 IPR006447 GO:0003677
Cma19g00201 306 Pfam Myb-like DNA-binding domain 29 79 IPR001005 -
Cma19g00201 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 83 IPR017930 -
Cma19g00201 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 255 IPR044848 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00201 Cma-Chr19:1331608 Cma06g01228 Cma-Chr6:8190100 3.89E-51 dispersed
Cma19g00201 Cma-Chr19:1331608 Cma02g01647 Cma-Chr2:9335073 2.15E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36867 PF00249 Myb_DNA-binding 3.50E-07 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00201 - - cmax:111466876 529.635