Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00204 ATGGCACCACTGCTAAACGATCAATTCAGTTTTCAAACGCCAGAAAGTCAGGCTGTCCAGACTAAAAAAATTCCCAACAAGTATCCTGGCTGGTATTCACCAGATACAGGAATTTGTCGTAGTGTCCATGCCTCTAGAGACTTGCCCACTGATCCATTTCTTGATGTTGCCTCTTATATCCTCTCCTTCCAACACAATGGTCGTTCAGCTCTCATTGATTCCTCTACTGGACATTCAATATCTTACAGGGAATTGTATCGTATGGTGAATTCCATGGCTTCTGGGCTCCAAAAATTGGGTGTTTCACAAGGGGATGTAGTCTTGCTTCTGTTACCAAATTCCATTTTCTATCCCATTGTTCTTCTGGGTGTGCTGTATTTGGGAGCTGTTATTACAACCATGTTTCCTCAAAGCAGTTCTCAAGAAATCAAGAAACGAATCAGTGAATGCAATGTGCGGCTGGCTTTTGCAACACCACAGAATGTTGGGAACTTTGAAGCATTGGGAGTTCAGGCAATTGGAGTACCAGAAAATACGAATTTGGACTTAATGAGACCGATGGGATTTTCTTCTTTTTATGAGCTTATTTCAAGTGGTTTTGATTTGAATAAAAGACATGTGATTAGACAGGAAGATACAGCTGCTATATTGTTTTCTTCAGGTACGACTGGAGTGAGCAAAGGGGTTCTGTTGACACATAGAAACTTTATATCTACGATCGAGCTTTTTGTTCGGTTTGAAGCTTCGCAGTATGAGTATTTGACTACAGAGAATGTGTATTTGGCTGCTATACCAATGTTTCATGTGTATGGTCTCTCCATTTTTGTGATGGGATTATTGTCATTGGGTTCTAGTATTGTTGTAATGAGCAAATTCGATGTCAAAGAGGTGGTCATGGCCATTGATAGATTTAAAGTTACACATTTTCCTGTTGTTCCGCCAATAATGATAGTTATGGCTAGGATTGCACGGAAATTTGGTGGGCACAGATTTCGTAGTTTGAAACAGGTTTCTTGTGGGGCTGCTTCTTTGAGTATGAAGATCGTAGGGGATTTTGTTCAGGCTCTCCCTCATGTTGACTTCATTCAGGGATATGGCATGACTGAGACCACAGCTGTAGGAACCCGTGGCTTCAATACCAAAAAGGCTCAAAACCATTTGTCTGTTGGACTCTTAGCACCAAACATGGAAGCTAAAGTTGTTGATTGGGTTAGCGCATCTATTATGCCTCCTGGTAAAACCGGCGAACTTTTGTTACGCGGACCTGGTTTAATGAAAGGGTACTTGAATAATCCCGAGGCAACAATGTCTACAATAGACCAAGAAAATTGGCTACATACTGGAGACATCGCCTACTTTGACCGAGATGGATACTTGTATGTTGTTGATCGTTTGAAGGAGGTTATAAAGTATAAGGGCTTTCAGATTCCAGTGGCATTTGTGGTGAAAAAGCCAGGAAGCTCACTCTCACAGAAAGATGTCATCGATTATGTTGCTCAACAGGTTGCGCCATATAAAAAGATCAGAAAAGTGGTGTTTACAGAATCAATACCCAAATCTGCTGCTGGCAAAGTACTGCGTAAGGAACTGGTGAAGCACTTGCCTTCTAAACTCTGA 1617 41.43 MAPLLNDQFSFQTPESQAVQTKKIPNKYPGWYSPDTGICRSVHASRDLPTDPFLDVASYILSFQHNGRSALIDSSTGHSISYRELYRMVNSMASGLQKLGVSQGDVVLLLLPNSIFYPIVLLGVLYLGAVITTMFPQSSSQEIKKRISECNVRLAFATPQNVGNFEALGVQAIGVPENTNLDLMRPMGFSSFYELISSGFDLNKRHVIRQEDTAAILFSSGTTGVSKGVLLTHRNFISTIELFVRFEASQYEYLTTENVYLAAIPMFHVYGLSIFVMGLLSLGSSIVVMSKFDVKEVVMAIDRFKVTHFPVVPPIMIVMARIARKFGGHRFRSLKQVSCGAASLSMKIVGDFVQALPHVDFIQGYGMTETTAVGTRGFNTKKAQNHLSVGLLAPNMEAKVVDWVSASIMPPGKTGELLLRGPGLMKGYLNNPEATMSTIDQENWLHTGDIAYFDRDGYLYVVDRLKEVIKYKGFQIPVAFVVKKPGSSLSQKDVIDYVAQQVAPYKKIRKVVFTESIPKSAAGKVLRKELVKHLPSKL 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1351565 1360154 + CmaCh19G002040.1 Cma19g00204 314892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00204 538 Gene3D - 468 535 IPR045851 -
Cma19g00204 538 Gene3D - 51 467 IPR042099 -
Cma19g00204 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 476 536 - -
Cma19g00204 538 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 23 476 - -
Cma19g00204 538 Pfam AMP-binding enzyme 64 471 IPR000873 -
Cma19g00204 538 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Cma19g00204 538 Pfam AMP-binding enzyme C-terminal domain 472 524 IPR025110 -
Cma19g00204 538 CDD 4CL 48 530 - -
Cma19g00204 538 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 476 536 - -
Cma19g00204 538 SUPERFAMILY Acetyl-CoA synthetase-like 64 534 - -
Cma19g00204 538 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 23 476 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01449 Cma-Chr3:9077395 Cma19g00204 Cma-Chr19:1351565 4.21E-30 dispersed
Cma18g00222 Cma-Chr18:1201248 Cma19g00204 Cma-Chr19:1351565 3.34E-114 dispersed
Cma19g00204 Cma-Chr19:1351565 Cma14g00225 Cma-Chr14:991400 3.50E-119 dispersed
Cma19g00204 Cma-Chr19:1351565 Cma09g00069 Cma-Chr9:298453 2.15E-128 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00204 K01904 - csv:101219578 866.3