Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00216 ATGCGTATGGAGCTATTCCCAGCACAGCCAGATTTATCCCTCCAAATTAGCCCTCCAAATACCAATAAACCTTCTTCTTCTTGGATAACAACACCTCAAGAAGAAGTTGATTTGAGGTTTTGGAATAATCTTAGTTTGGAGTCCACTAAATCCACTCCCAAACACCCCCCTCCACCTTCGCCTCCTAATCATCATCTTCATCATCATCATATATCCGCTCCCCTTTTCGAAACCCTAAACAAAACCAGACCCCGACCCGCCATTTTCCACCACGATACGACGTCGCTGCTCAGCCCGTCACCACCACCGCCTCCCCCTCTCCCGTTTCCGGGATTCTTGCAACCCATTAGAGGAATTCCGGTGTACCATCAAACAATTAACCCCTCCGGCATCGGTGTCGATGGTGGCCGAGGCATTACTCCCTCTACCGTCGACCACCGCCAGATTATGATGCGGTCGAGGTTCTTGTCTAGGTTTCCGGCCAAACGAAGCATGAGAGCCCCTCGGATGAGATGGACATCAACTCTTCATGCTCGCTTTGTTCATGCTGTCGAACTTCTCGGCGGCCACGAAAGAGCTACACCGAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGATGTACAGAACAGTGAAGACTACAGACAGAGCTGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGATATTCAAAAGCCAGCCATGGGAAGGCAAAATGAGAGCTTAGTTCATCAAACAACAAGGCAAGACAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCAAACGATTCTTCTCGGGACCTTTCTTCGTCCCTCGAGAATGATACGGATCCGAAGTGCTCAAACAACGAGAGACTATCGGAAATAAGCTCATCTACCGATGATTGTGGAGGGACAAACTCTCATAAGCCAAATTTAGAATTCACATTAGGAAGGTCAATTTGA 1050 46.67 MRMELFPAQPDLSLQISPPNTNKPSSSWITTPQEEVDLRFWNNLSLESTKSTPKHPPPPSPPNHHLHHHHISAPLFETLNKTRPRPAIFHHDTTSLLSPSPPPPPPLPFPGFLQPIRGIPVYHQTINPSGIGVDGGRGITPSTVDHRQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNESLVHQTTRQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDTDPKCSNNERLSEISSSTDDCGGTNSHKPNLEFTLGRSI 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1456269 1460973 - CmaCh19G002160.1 Cma19g00216 314904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00216 349 MobiDBLite consensus disorder prediction 318 343 - -
Cma19g00216 349 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 168 221 IPR006447 GO:0003677
Cma19g00216 349 MobiDBLite consensus disorder prediction 13 28 - -
Cma19g00216 349 MobiDBLite consensus disorder prediction 47 68 - -
Cma19g00216 349 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 347 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cma19g00216 349 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 347 - -
Cma19g00216 349 MobiDBLite consensus disorder prediction 299 349 - -
Cma19g00216 349 MobiDBLite consensus disorder prediction 1 28 - -
Cma19g00216 349 Gene3D - 167 224 - -
Cma19g00216 349 SUPERFAMILY Homeodomain-like 165 221 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00216 - - - cpep:111811344 610.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00506 Cma-Chr12:2616517 Cma19g00216 Cma-Chr19:1456269 7.92E-36 dispersed
Cma14g00875 Cma-Chr14:4531701 Cma19g00216 Cma-Chr19:1456269 8.33E-51 dispersed
Cma18g00088 Cma-Chr18:398445 Cma19g00216 Cma-Chr19:1456269 2.39E-38 dispersed
Cma19g00216 Cma-Chr19:1456269 Cma01g00333 Cma-Chr1:1621575 7.34E-45 dispersed
Cma16g01184 Cma-Chr16:9056611 Cma19g00216 Cma-Chr19:1456269 1.85E-74 wgd
Cma19g00216 Cma-Chr19:1456269 Cma02g01632 Cma-Chr2:9245371 3.84E-153 wgd
Cma19g00216 Cma-Chr19:1456269 Cma06g00631 Cma-Chr6:3098366 2.58E-66 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma19g00216 . 150 347 G2-like Transcription Factor Family AT5G16560 51.5 1.2e-40 164.9
Cma09g00194 CCT 1 164 G2-like Transcription Factor Family AT5G42630 56.8 1.4e-38 157.1
Cma12g00506 CCT,CST 13 151 G2-like Transcription Factor Family AT5G42630 58.6 7.9e-37 151.4
Cma04g02062 . 20 258 G2-like Transcription Factor Family AT1G25550 51.6 2.6e-50 196.4
Cma15g00910 . 20 257 G2-like Transcription Factor Family AT1G25550 53.4 1.0e-49 194.5
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT5G05090 54.6 1.5e-74 276.9
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT5G05090 53.9 5.3e-72 268.5
Cma14g00494 . 1 253 G2-like Transcription Factor Family AT5G05090 60.1 3.3e-66 249.2
Cma06g00034 . 1 274 G2-like Transcription Factor Family AT5G05090 51.7 1.3e-65 247.3
Cma06g01228 . 12 316 G2-like Transcription Factor Family AT4G13640 56.3 1.2e-61 234.2
Cma14g01894 . 44 336 G2-like Transcription Factor Family AT4G13640 50.3 2.1e-53 206.8
Cma06g01228 . 12 268 G2-like Transcription Factor Family AT3G24120 62.2 1.8e-76 283.5
Cma14g01894 . 51 289 G2-like Transcription Factor Family AT3G24120 59.1 3.8e-63 239.2
Cma20g00290 . 22 194 G2-like Transcription Factor Family AT3G24120 54.6 3.5e-40 162.9
Cma19g01121 . 18 168 G2-like Transcription Factor Family AT3G24120 58.3 7.8e-40 161.8
Cma02g00669 . 23 168 G2-like Transcription Factor Family AT3G24120 61.7 7.8e-40 161.8
Cma10g01192 . 16 166 G2-like Transcription Factor Family AT3G24120 58.9 1.7e-39 160.6
Cma19g00201 . 12 160 G2-like Transcription Factor Family AT3G24120 51.9 4.7e-37 152.5
Cma07g00372 . 60 178 G2-like Transcription Factor Family AT3G24120 66.9 6.2e-37 152.1
Cma06g01737 . 38 269 G2-like Transcription Factor Family AT1G69580 50.4 2.3e-40 163.7
Cma05g00862 . 7 200 G2-like Transcription Factor Family AT1G69580 50.5 9.1e-37 151.8
Cma19g01121 . 1 379 G2-like Transcription Factor Family AT1G79430 53.8 7.8e-87 318.2
Cma10g01192 . 1 340 G2-like Transcription Factor Family AT1G79430 54.6 4.4e-82 302.4
Cma20g00290 . 1 365 G2-like Transcription Factor Family AT1G79430 52.7 2.5e-77 286.6
Cma02g00669 . 1 359 G2-like Transcription Factor Family AT1G79430 52.4 3.3e-77 286.2
Cma14g01894 . 52 225 G2-like Transcription Factor Family AT1G79430 59.8 9.3e-40 161.8
Cma06g01228 . 26 204 G2-like Transcription Factor Family AT1G79430 55.7 2.1e-39 160.6
Cma06g01737 . 77 285 G2-like Transcription Factor Family AT3G04030 59.4 3.1e-47 186.4
Cma06g01737 . 77 269 G2-like Transcription Factor Family AT5G18240 50.5 1.6e-38 157.5
Cma07g00373 . 76 319 G2-like Transcription Factor Family AT2G01060 60.7 2.8e-56 216.1
Cma03g00611 . 84 327 G2-like Transcription Factor Family AT2G01060 59.3 1.9e-52 203.4
Cma07g01099 . 1 299 G2-like Transcription Factor Family AT3G10760 61.9 1.3e-88 323.9
Cma03g00158 . 64 367 G2-like Transcription Factor Family AT3G10760 60.8 3.0e-88 322.8
Cma06g00034 . 1 277 G2-like Transcription Factor Family AT3G10760 58.8 8.6e-80 294.7
Cma14g00494 . 1 258 G2-like Transcription Factor Family AT3G10760 56.6 2.3e-72 270.0
Cma06g00034 . 1 205 G2-like Transcription Factor Family AT2G40970 62.5 1.5e-60 230.3
Cma07g01099 . 1 204 G2-like Transcription Factor Family AT2G40970 62.0 7.4e-60 228.0
Cma03g00158 . 64 266 G2-like Transcription Factor Family AT2G40970 58.8 1.4e-58 223.8
Cma14g00494 . 1 192 G2-like Transcription Factor Family AT2G40970 59.0 3.1e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36869 None None None None Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00216 Cma_Chr19 FPKM 7.092131 7.62315 4.097564 3.380756 6.665808 4.450406 5.038723 0.0 0.0 0.0