Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00216 ATGCGTATGGAGCTATTCCCAGCACAGCCAGATTTATCCCTCCAAATTAGCCCTCCAAATACCAATAAACCTTCTTCTTCTTGGATAACAACACCTCAAGAAGAAGTTGATTTGAGGTTTTGGAATAATCTTAGTTTGGAGTCCACTAAATCCACTCCCAAACACCCCCCTCCACCTTCGCCTCCTAATCATCATCTTCATCATCATCATATATCCGCTCCCCTTTTCGAAACCCTAAACAAAACCAGACCCCGACCCGCCATTTTCCACCACGATACGACGTCGCTGCTCAGCCCGTCACCACCACCGCCTCCCCCTCTCCCGTTTCCGGGATTCTTGCAACCCATTAGAGGAATTCCGGTGTACCATCAAACAATTAACCCCTCCGGCATCGGTGTCGATGGTGGCCGAGGCATTACTCCCTCTACCGTCGACCACCGCCAGATTATGATGCGGTCGAGGTTCTTGTCTAGGTTTCCGGCCAAACGAAGCATGAGAGCCCCTCGGATGAGATGGACATCAACTCTTCATGCTCGCTTTGTTCATGCTGTCGAACTTCTCGGCGGCCACGAAAGAGCTACACCGAAGTCGGTTCTCGAGCTTATGGATGTCAAAGATCTAACCTTAGCCCATGTCAAATCTCATTTACAGATGTACAGAACAGTGAAGACTACAGACAGAGCTGCAGCTTCTTCAGGCCAATCAGATTTATATGAAAATGCTTCATCTGGGGACACAAGCAATATTGAAGATATAATATTTGATATTCAAAAGCCAGCCATGGGAAGGCAAAATGAGAGCTTAGTTCATCAAACAACAAGGCAAGACAAGGATTATCATGCCCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGTTTGCCAAACGATTCTTCTCGGGACCTTTCTTCGTCCCTCGAGAATGATACGGATCCGAAGTGCTCAAACAACGAGAGACTATCGGAAATAAGCTCATCTACCGATGATTGTGGAGGGACAAACTCTCATAAGCCAAATTTAGAATTCACATTAGGAAGGTCAATTTGA 1050 46.67 MRMELFPAQPDLSLQISPPNTNKPSSSWITTPQEEVDLRFWNNLSLESTKSTPKHPPPPSPPNHHLHHHHISAPLFETLNKTRPRPAIFHHDTTSLLSPSPPPPPPLPFPGFLQPIRGIPVYHQTINPSGIGVDGGRGITPSTVDHRQIMMRSRFLSRFPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDLYENASSGDTSNIEDIIFDIQKPAMGRQNESLVHQTTRQDKDYHALWSNSSREAWLHGLPNDSSRDLSSSLENDTDPKCSNNERLSEISSSTDDCGGTNSHKPNLEFTLGRSI 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1456269 1460973 - CmaCh19G002160.1 Cma19g00216 314904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00216 349 MobiDBLite consensus disorder prediction 318 343 - -
Cma19g00216 349 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 168 221 IPR006447 GO:0003677
Cma19g00216 349 MobiDBLite consensus disorder prediction 13 28 - -
Cma19g00216 349 MobiDBLite consensus disorder prediction 47 68 - -
Cma19g00216 349 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 347 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cma19g00216 349 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 347 - -
Cma19g00216 349 MobiDBLite consensus disorder prediction 299 349 - -
Cma19g00216 349 MobiDBLite consensus disorder prediction 1 28 - -
Cma19g00216 349 Gene3D - 167 224 - -
Cma19g00216 349 SUPERFAMILY Homeodomain-like 165 221 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00506 Cma-Chr12:2616517 Cma19g00216 Cma-Chr19:1456269 7.92E-36 dispersed
Cma14g00875 Cma-Chr14:4531701 Cma19g00216 Cma-Chr19:1456269 8.33E-51 dispersed
Cma18g00088 Cma-Chr18:398445 Cma19g00216 Cma-Chr19:1456269 2.39E-38 dispersed
Cma19g00216 Cma-Chr19:1456269 Cma01g00333 Cma-Chr1:1621575 7.34E-45 dispersed
Cma16g01184 Cma-Chr16:9056611 Cma19g00216 Cma-Chr19:1456269 1.85E-74 wgd
Cma19g00216 Cma-Chr19:1456269 Cma02g01632 Cma-Chr2:9245371 3.84E-153 wgd
Cma19g00216 Cma-Chr19:1456269 Cma06g00631 Cma-Chr6:3098366 2.58E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36869 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00216 - - cpep:111811344 610.912