Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00218 ATGTATGGAGATTGCCAAGTGATATCAAGCAATATGGGAACAAACATAAACCCTAATTTCAATTTCATCTCCAATTTCCAACACTTTTCTTCCATATTGCCTAAGGAGGAAAATGGGGTATTGAGAGGGAAAGAAGATATGGAAAGTGGGTCTGGAAGTGAGCAGCTTGTTGAAGAACATCAAGGAATAATTGAAATGGATAGCAATAATGATAATGTTCTTCACCAAAATTTGAAGAAGAAACGCTATCATAGGCATACTGCTCGTCAGATCCAAGAAATGGAGGCTTTGTTTAAGGAATGTCCACACCCTGATGACAAGCAGAGGCTTAAACTTAGCCAAGAACTCGGACTCAAACCTCGTCAAGTTAAGTTTTGGTTCCAAAATAGAAGAACCCAGATGAAGGCACAACACGACAGAGCTGATAATGTGATACTTCGAGCTGAAAATGAAACCTTAAAAAATGAGAATTATAGACTGCAAACTGCCCTAAGAAACATCATATGCCCTAGCTGTGGAGGGCAGGGTATCCTTGGGGAACCCAGCTTGGATGAACAGCAGCTTCGTCTCGAGAATGCTAGGCTTCGAGATCAGTTGGAACAAGTTTGCTCGTTGACCACAAGATACACTGGTCGCCCAATTGAAGGGATGCCCATGCAACCATCTTTGGATTTGGACATGAATATATACTCGAGGCAATACACGGAGGCCATGGTTTCGTCCTCCGACATGATGTCGATGCCCTCGATGCTCCCGCCTGAGGCTGCCCACTTCTCGAAGGGCGACCTATTAATTGATGAGGAAAAGACACTGGCAATGGACCTGGCTGTGTCGTCCATAGCTGAACTTGTTAAGATGTGTCGCTCGACTGAGCCTCTTTGGGTTCGAGATAGCGAGAGCGGTAAGGACATTCTAAATGTCGAAGAGCATGCTAGGATGTTTCCATGGCCATTGAACCTCAAGCAACACTTGATCAATGAGTTTAGGACCGAAGCCACTCGTGACAATGCCGTTGTTATAATGAATAGCATTAATCTTGTCGACGCCTTTCTTGATGCCAACAAATGGATGGAATTATTTCCTTCAATTGTGGCCAAAGCAAGAACTATTCAAGTCATTTCATCAAGTGTTTCAGGCCATGCCAGTGGTTCCCTTCAGCTGATGTATGCAGAACTTCAAGCCCTTTCTCCGCTTGTTCCGACGAGAGAAGCTCACTTTCTCCGATGCTGCCAACAGAACATCGACGAAGGAAGCTGGGCCATCGTCGATTTCCCAATCGACACCTTTCACGACAGCCTTCAGCACTCGTTTCCGAGATACAGAAGAAAGCCCTCTGGTTGCATTATTCAAGACATGCCCAATGGATACTCTAGGGTTACATGGGTGGAGCATGGAGAGATAGAAGAGAAGCCAATCCATCAAATACTCAATCACTTTGTGCATAGTGGAATGGCTTTTGGGGCACACCGTTGGTTGGCTATCTTACAAAGGCAATGTGAGAGAATTGCAAGCCTCATGGCTAGAAACATCTCTGATCTTGGAGTAATACCTTCACCGGAAGCTAGACAAAACCTAATGAAACTAGCACAAAGAATGATCAGAACTTTCTCCGTCAACATAAGCACCTCCGGTGGCCAGTCGTGGACGGCGTTATCTGAATCTCCTGACGATACTGTTCGTATAACCACACGAAAAATTATCGAGCCTGGCCAACCTAATGGGGTTATTCTCAGCGCCGTCTCGACCACTTGGATTCCTTATCCTCATTATCGAGTCTTCGATCTTCTTCGAGACGAACGTCGACGATCTCAGCTAGAGGTTCTTTCAAATGGGAATTCGCTGCATGAAGTTGCTCACATTGCCAATGGCTCTCACCCTGGAAATTGCATCTCTCTTCTTCGTATTAATGTGGCTAGCAACTCGTCCCAGCACGTCGAGCTAATGCTGCAGGAGAGCTGCACGGACCAGTCCGGCAGCCTCGTCGTCTACACAACAATCGACGTCGATTCAATTCAATTAGCCATGAGTGGAGAAGACCCATCTTGCATTCCTCTCCTCCCCATAGGATTTTCCATTGTCCCTGTCGTCGGGTCTACCATTGACGGACATCCATCACCACCACAAGAAGACAGTGTAGCTAACTCCGGCTGCCTCCTTACCGTCGGCCTGCAAGTTCTAGCCAGCACTATTCCATCAGCAAAGCTCAACCTATCAAGCGTCACTGCCATCAACAACCACCTATGTAACACGGTGCACCAAATCAACGCCGCTCTCGGCAGCCCGGCTAATATCGAGAACGGTAATACCATTGCTGAGCCTAATAATGCACCGGCGCCGGCACCGGCGCCAACACCCAAGCAATAA 2364 46.79 MYGDCQVISSNMGTNINPNFNFISNFQHFSSILPKEENGVLRGKEDMESGSGSEQLVEEHQGIIEMDSNNDNVLHQNLKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMKAQHDRADNVILRAENETLKNENYRLQTALRNIICPSCGGQGILGEPSLDEQQLRLENARLRDQLEQVCSLTTRYTGRPIEGMPMQPSLDLDMNIYSRQYTEAMVSSSDMMSMPSMLPPEAAHFSKGDLLIDEEKTLAMDLAVSSIAELVKMCRSTEPLWVRDSESGKDILNVEEHARMFPWPLNLKQHLINEFRTEATRDNAVVIMNSINLVDAFLDANKWMELFPSIVAKARTIQVISSSVSGHASGSLQLMYAELQALSPLVPTREAHFLRCCQQNIDEGSWAIVDFPIDTFHDSLQHSFPRYRRKPSGCIIQDMPNGYSRVTWVEHGEIEEKPIHQILNHFVHSGMAFGAHRWLAILQRQCERIASLMARNISDLGVIPSPEARQNLMKLAQRMIRTFSVNISTSGGQSWTALSESPDDTVRITTRKIIEPGQPNGVILSAVSTTWIPYPHYRVFDLLRDERRRSQLEVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQHVELMLQESCTDQSGSLVVYTTIDVDSIQLAMSGEDPSCIPLLPIGFSIVPVVGSTIDGHPSPPQEDSVANSGCLLTVGLQVLASTIPSAKLNLSSVTAINNHLCNTVHQINAALGSPANIENGNTIAEPNNAPAPAPAPTPKQ 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1489764 1496001 - CmaCh19G002180.1 Cma19g00218 314906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00218 787 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Cma19g00218 787 Pfam START domain 276 501 IPR002913 GO:0008289
Cma19g00218 787 SUPERFAMILY Bet v1-like 266 503 - -
Cma19g00218 787 Gene3D - 66 148 - -
Cma19g00218 787 SMART HOX_1 79 141 IPR001356 GO:0003677
Cma19g00218 787 SMART START_1 274 501 IPR002913 GO:0008289
Cma19g00218 787 SUPERFAMILY Homeodomain-like 69 137 IPR009057 -
Cma19g00218 787 MobiDBLite consensus disorder prediction 765 787 - -
Cma19g00218 787 Coils Coil 131 151 - -
Cma19g00218 787 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Cma19g00218 787 PANTHER - 65 765 - -
Cma19g00218 787 CDD homeodomain 80 138 IPR001356 GO:0003677
Cma19g00218 787 ProSiteProfiles START domain profile. 265 504 IPR002913 GO:0008289
Cma19g00218 787 Gene3D - 310 499 IPR023393 -
Cma19g00218 787 CDD START_ArGLABRA2_like 269 500 - -
Cma19g00218 787 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 65 765 IPR042160 -
Cma19g00218 787 Pfam Homeodomain 80 135 IPR001356 GO:0003677
Cma19g00218 787 SUPERFAMILY Bet v1-like 538 755 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00218 Cma-Chr19:1489764 Cma13g01095 Cma-Chr13:8246548 0 dispersed
Cma19g00218 Cma-Chr19:1489764 Cma02g01629 Cma-Chr2:9223337 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36871 PF01852 START 1.20E-42 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00218 - - csv:101212772 1379.39