Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00223 ATGAGAAGCCATGGATCATCATGTTCGTACGAGGAGGAGGCCATGGACAAGGAGGATGAACACAAAGTGAAGAAGAAGAAGAAGGAACACCAAAACAAAGTTGCTTTTTATAAGCTTTTTGCTTTTGCTGATTGTTATGATTATTTTCTCATGGCTTTTGGTTCCATTGGAGCTTGTCTTCATGGTGCTTCTGTTCCTGTCTTCTTCATCTTCTTTGGGAAGCTTATTAATATCATTGGTATGGCTTATCTCTTTCCCGAAGAAGCTGCTCCAAAAGTTGCCAAGTACTCTTTGGATTTTTTATACCTAAGTGTGGCTATACTATTCTCATCATGGGCAGAGGTGGCTTGTTGGATGCATAGTGGAGAAAGGCAAGCAGCCAAAATGAGAATGGCTTATTTAAGATCAATGTTGAGTCAAGATATTAGCCTCTTTGACACTGAAGCTTCAACCGGTGAAGTCATTGCTGCTATTACCAGTGATATTGTTGTTGTTCAAGATGCCATTTCCGAAAAGGTGGGGAACTTTTTGCACTATATAAGCCGGTTTATATCAGGGTTTATCATTGGATTTGTGAGGGTATGGCAAATCAGTCTTGTCACATTATCTATTGTTCCCTTGATTGCACTTGCTGGTGGTCTCTATGCTTTTGTCACCATTGGACTTATTGCCAAAATAAGAAAATCCTATGTCAAGGCTGGTGAGATTGCTGAAGAGATTCTAGGAAATGTAAGAACAGTTCAAGCATTTGCTGGGGAAGAAAGGGCTGTAGGATTATACAAAGGAGCTCTCAGAAATACCTACAAGTATGGAAGAAAAGCAGGGCTGGCTAAGGGACTTGGCCTGGGATCCATGCATTGTGTACTTTTCTTGTCATGGGCTCTGCTTGTGTGGTTTACCAGCATTGTTGTTCATAAGGGCATTGCCAATGGTGGAGACTCCTTCACCACAATGCTTAATGTTGTCATTTCTGGCCTGTCACTTGGGCAGGCTGCACCAGATATTTCTGCCTTCGTTCGAGCAAAGGCAGCAGCGTATCCTATTTTTCAGATGATAGAAAGAAACACAGTTAGCAAAAGCAGCTCCAAAACTGGTCGGAAACTAAACAAGCTCGACGGTCATATTCAATTCAAGGATGTCAGTTTCAGCTATCCTTCTCGTTCAGATGTAATTATATTTAATAAGTTATCTCTCGATATTCCTGCGGGCAAGATTGTAGCTCTTGTAGGAGGAAGTGGGTCAGGAAAGAGCACGGTCATATCTTTGATCGAACGGTTCTATGAACCGATTTCTGGAGAGATTCTACTAGATGGTAATAACATCAAGGAGCTGGATCTCAAGTGGCTTAGGCAGCAAATTGGTCTGGTCAATCAAGAGCCTGCCCTCTTTGCTACGAGCATTAGGGAGAACATTCTATATGGAAAAGATGATGCAACACTCGAGGACATCACACGTGCAGCAAAACTTTCTGAGGCATTGTCGTTTATAAACAATCTCCCTGAAAGATTCGAAACTCAGGTTGGTGAAAGAGGGGTCCAATTATCTGGAGGACAAAAGCAAAGGATTGCAATATCTCGTGCAATTGTTAAAAATCCATCGATCCTCCTGTTGGATGAGGCAACCAGTGCTCTAGATGCAGAATCCGAGAAGAGTGTTCAAGAAGCACTCGATCGTGTCATGGTTGGTCGAACAACTGTTGTGGTTGCTCATCGTCTATCTACCATAAGGAATGCAGATGTGATTGCTGTCGTTCAAGAGGGGAAAATAGTTGAAACTGGAAGCCATGATGAGCTCATTTCAAACCCGGACAGTGTTTATGCATCACTTGTACAGTTTCAAGAAACGGCATCTCTGCAACGCCATCCTTCGATTGGACAGTTGGGTCGACCACCAAGTATAAAGTACTCGCGAGAATTATCTCGCACAACAACAAGCTTTGGTGCGAGTTTTCGCTCTGAGAAAGAATCTCTGGGACGGATTGGAGTTGATGGAATGGAAATGGAGAAACCGAAGCATGTTTCAGCAAAAAGACTTTACTCCATGGTCGGACCGGATTGGATGTATGGAGTCGTTGGCATCATTGGAGCGTTCGTTACAGGATCCCAGATGCCCCTTTTTGCTCTTGGGGTCTCTCAGGCTCTTGTTGCTTTTTATATGGACTGGAATACAACTCAACATGAGATCAAGAAGATTTCATTGCTTTTCTGTGGTGGTGCAGTTTTAACCGTCATTTTTCATGCAGTCGAGCATCTCTGTTTCGGAATTATGGGAGAGCGACTCACTCTTCGAGTTCGAGAAAAGATGTTCCATGCTATGTTGAGAAACGAGATAGGTTGGTTCGATGATATAGACAACACGAGTGCTATGCTTTCATCACGCCTAGAAACTGATGCAACTTTGTTACGAACTATAGTTGTCGACCGCTCGACAATTCTTCTGCAGAATCTAGCTTTGGTCGTTGCATCGTTCATCATTGCGTTCATATTGAATTGGAGAATCACTTTAGTTGTCCTGGCTACTTATCCATTGATCATTAGCGGTCACATTAGCGAGAAACTTTTTATGCAAGGCTATGGTGGAAATTTGAGTAAAGCATACCTGAAAGCCAATACACTGGCCGGTGAGGCAGTTGGCAATATTAGAACTGTTGCTGCATTTTGTTCCGAGGAGAAGGTCCTCGATCTATATGCTAAGGAGCTTGTTGAGCCCTCGAGACGTTCACTTAAACGTGGACAGATTGCTGGCATATTCTACGGTGTCTCGCAGTTCTTCATCTTTTCATCTTATGGTTTAGCCTTGTGGTACGGTTCGGTCTTGATGGGACGGGGGCTTGCTAGCTTCAAATCTATTATGAAAGCATTCATGGTTTTGATAGTAACAGCATTAGCAATGGGTGAGACTTTGGCACTAGCCCCTGACCTTTTAAAGGGAAATCAGATGGTGGCATCAGTGTTCGAGGTGATGGATCGACAAACAGAGGTGTCGGGCGATGTCGGTGAAGAGCTAAATGTCGTGGAGGGTACCATTGAGCTGAAGAACGTCGAGTTCAGCTATCCATCAAGACCAGATGTTTTGATCTTCAAAGATTTCAATCTTAAAGTGAGATCAGGCAAGAGTATAGCCTTAGTTGGGCAAAGCGGCTCAGGGAAGAGCTCTGTTCTAGCCCTTATACTGCGTTTTTACGATCCGATAGCTGGGAGGGTGATGATTGACGGAAGAGATATCAAAAAACTGAAGGTCAAATCTCTGAGAAAGCACATAGGTCTTGTCCAACAAGAACCGGCTCTTTTTGCCACATCGATTTACGAGAACATTCTTTACGGGAAAGAAGGAGCTTCCGAAGCCGAAGTATTCGAAGCAGCAAAGCTCGCCAACGCACATACCTTCATCAGTGCTCTCCCTGAAGGCTACTCAACAAAAGTCGGTGAAAGAGGGATCCAACTCTCAGGTGGGCAACGACAGAGAATAGCCATTGCACGAGCAGTCCTGAAGAACCCGGAAATCCTACTACTTGACGAAGCCACAAGCGCTCTCGATGTCGAATCAGAACGCGTCGTTCAACAAGCCTTAGATAGACTGATGAAGCACAGAACAACTGTGGTGGTTGCTCACAGGCTTTCCACCATTAAAAATTGTGACCAAATCTCATTGATCCAAGATGGTAAGATAGTAGAACAAGGGACTCATTCAAGCCTTTGTGAGAACAAGAATGGAGCTTATTACAAGTTGATCAACATCCAACAACAGCAACAACTACAGTGA 3762 43.7 MRSHGSSCSYEEEAMDKEDEHKVKKKKKEHQNKVAFYKLFAFADCYDYFLMAFGSIGACLHGASVPVFFIFFGKLINIIGMAYLFPEEAAPKVAKYSLDFLYLSVAILFSSWAEVACWMHSGERQAAKMRMAYLRSMLSQDISLFDTEASTGEVIAAITSDIVVVQDAISEKVGNFLHYISRFISGFIIGFVRVWQISLVTLSIVPLIALAGGLYAFVTIGLIAKIRKSYVKAGEIAEEILGNVRTVQAFAGEERAVGLYKGALRNTYKYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKGIANGGDSFTTMLNVVISGLSLGQAAPDISAFVRAKAAAYPIFQMIERNTVSKSSSKTGRKLNKLDGHIQFKDVSFSYPSRSDVIIFNKLSLDIPAGKIVALVGGSGSGKSTVISLIERFYEPISGEILLDGNNIKELDLKWLRQQIGLVNQEPALFATSIRENILYGKDDATLEDITRAAKLSEALSFINNLPERFETQVGERGVQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADVIAVVQEGKIVETGSHDELISNPDSVYASLVQFQETASLQRHPSIGQLGRPPSIKYSRELSRTTTSFGASFRSEKESLGRIGVDGMEMEKPKHVSAKRLYSMVGPDWMYGVVGIIGAFVTGSQMPLFALGVSQALVAFYMDWNTTQHEIKKISLLFCGGAVLTVIFHAVEHLCFGIMGERLTLRVREKMFHAMLRNEIGWFDDIDNTSAMLSSRLETDATLLRTIVVDRSTILLQNLALVVASFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANTLAGEAVGNIRTVAAFCSEEKVLDLYAKELVEPSRRSLKRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGRGLASFKSIMKAFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELNVVEGTIELKNVEFSYPSRPDVLIFKDFNLKVRSGKSIALVGQSGSGKSSVLALILRFYDPIAGRVMIDGRDIKKLKVKSLRKHIGLVQQEPALFATSIYENILYGKEGASEAEVFEAAKLANAHTFISALPEGYSTKVGERGIQLSGGQRQRIAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKHRTTVVVAHRLSTIKNCDQISLIQDGKIVEQGTHSSLCENKNGAYYKLINIQQQQQLQ 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1529429 1537123 + CmaCh19G002230.1 Cma19g00223 314911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00223 1253 Gene3D ABC transporter type 1, transmembrane domain 38 978 IPR036640 GO:0005524|GO:0016021
Cma19g00223 1253 Gene3D - 1000 1253 IPR027417 -
Cma19g00223 1253 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 32 1248 IPR039421 -
Cma19g00223 1253 ProSitePatterns ABC transporters family signature. 1148 1162 IPR017871 GO:0005524
Cma19g00223 1253 Pfam ABC transporter transmembrane region 56 323 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma19g00223 1253 Pfam ABC transporter transmembrane region 691 962 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma19g00223 1253 PANTHER ABC TRANSPORTER B FAMILY MEMBER 2 32 1248 - -
Cma19g00223 1253 CDD ABC_6TM_Pgp_ABCB1_D1_like 51 348 - -
Cma19g00223 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 375 611 IPR003439 GO:0005524
Cma19g00223 1253 SUPERFAMILY ABC transporter transmembrane region 39 345 IPR036640 GO:0005524|GO:0016021
Cma19g00223 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 52 340 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma19g00223 1253 SUPERFAMILY ABC transporter transmembrane region 668 990 IPR036640 GO:0005524|GO:0016021
Cma19g00223 1253 ProSitePatterns ABC transporters family signature. 514 528 IPR017871 GO:0005524
Cma19g00223 1253 Gene3D - 365 614 IPR027417 -
Cma19g00223 1253 CDD ABC_MTABC3_MDL1_MDL2 375 613 - -
Cma19g00223 1253 CDD ABC_MTABC3_MDL1_MDL2 1009 1244 - -
Cma19g00223 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 690 976 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cma19g00223 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1247 IPR027417 -
Cma19g00223 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1245 IPR003439 GO:0005524
Cma19g00223 1253 Pfam ABC transporter 1028 1176 IPR003439 GO:0005524
Cma19g00223 1253 Pfam ABC transporter 394 542 IPR003439 GO:0005524
Cma19g00223 1253 SMART AAA_5 402 594 IPR003593 -
Cma19g00223 1253 SMART AAA_5 1036 1208 IPR003593 -
Cma19g00223 1253 CDD ABC_6TM_Pgp_ABCB1_D2_like 679 994 - -
Cma19g00223 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 613 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00277 Cma-Chr15:1315054 Cma19g00223 Cma-Chr19:1529429 0 dispersed
Cma18g00668 Cma-Chr18:6178799 Cma19g00223 Cma-Chr19:1529429 7.01E-125 dispersed
Cma19g00223 Cma-Chr19:1529429 Cma15g00308 Cma-Chr15:1429662 3.33E-120 dispersed
Cma09g00095 Cma-Chr9:418372 Cma19g00223 Cma-Chr19:1529429 1.45E-129 transposed
Cma11g00339 Cma-Chr11:1696355 Cma19g00223 Cma-Chr19:1529429 5.21E-31 transposed
Cma17g01304 Cma-Chr17:8783627 Cma19g00223 Cma-Chr19:1529429 1.99E-10 transposed
Cma20g00298 Cma-Chr20:1459972 Cma19g00223 Cma-Chr19:1529429 5.62E-57 transposed
Cma19g00223 Cma-Chr19:1529429 Cma02g01626 Cma-Chr2:9212193 1.39E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00223 K05658 - csv:101219304 2254.94