Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cma19g00230	ATGAGTCTTGATGCTCTTTCTTCCAATGACTTCTTCAACTTCATCATCTACGACACCATCTCTGCTATCCCCAACACCTCCCTCGTCTTCCACGACTCATCGGAGAACACATTTTTCTCCGATGACACATGTTCGAGACATCAAGATCACCAACATGGGTTTGAAGGCTGCTTGAAACCCAATAGAAAACGTCGTCCGAGTGAGTCGGAAAGCCTCCGGACGGCGCCAACACGACAAGGGAAGAAGAAGAGGAAGAGAAAACCAAGGGTTTCTAAGAACAAAGAGGAAGCTGAAACACAAAGAATGACACACATTGCTGTTGAAAGGAACCGCCGCAAACAGATGAATGAGCATCTTTCAGTGTTACGTTCACTCATGCCCGAATCCTATGTTCAAAGGGGTGACCAAGCATCCATAGTAGGAGGAGCGGTTGAGTTTGTGAAGGAATTGGAGCATCTTCTATCAACTTTGGAAGCCAAGAAGCTGCAAGTTTTACAGAAAGAAGTTGATCATCAAGAACAAGAGATTAATGATAATAAGTTGTTTTCATTTGGAAGTTTGTTGATGAATAATTCAGATCATAATTATTGTTCCCAATACTCTACCAAATACACATCTAAATCCAAGGCTTCTTCAGCTGATATTGAAGTTACTTTGATTGAAACTCATGCAAACCTTAGAATCCTATCAACAAGAAGCCATAGACAGCTCTTGAAGCTCATTGCTGGTTTGCAGGCTCTTCGTCTCACCATTCTTCATCTCAGTCTTACTGATTTTCATCCAGTGGTTCTTTACTCCATCAGCCTCAAGGTTGAAGAAGGATGCCAACTGAGATCAGTAGATGACATAGCAGCAGCAGCACATCATATGGTGAGAATAATTGAGGAAGAAACTATGTTATGTTAA	906	41.83	MSLDALSSNDFFNFIIYDTISAIPNTSLVFHDSSENTFFSDDTCSRHQDHQHGFEGCLKPNRKRRPSESESLRTAPTRQGKKKRKRKPRVSKNKEEAETQRMTHIAVERNRRKQMNEHLSVLRSLMPESYVQRGDQASIVGGAVEFVKELEHLLSTLEAKKLQVLQKEVDHQEQEINDNKLFSFGSLLMNNSDHNYCSQYSTKYTSKSKASSADIEVTLIETHANLRILSTRSHRQLLKLIAGLQALRLTILHLSLTDFHPVVLYSISLKVEEGCQLRSVDDIAAAAHHMVRIIEEETMLC	301

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
19	1582171	1584737	+	CmaCh19G002300.1	Cma19g00230	314918

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cma19g00230	301	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	98	165	IPR036638	GO:0046983
	Cma19g00230	301	MobiDBLite	consensus disorder prediction	43	77	-	-
	Cma19g00230	301	Pfam	Helix-loop-helix DNA-binding domain	100	151	IPR011598	GO:0046983
	Cma19g00230	301	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	99	150	IPR011598	GO:0046983
	Cma19g00230	301	SMART	finulus	105	156	IPR011598	GO:0046983
	Cma19g00230	301	MobiDBLite	consensus disorder prediction	43	101	-	-
	Cma19g00230	301	Gene3D	-	90	180	IPR036638	GO:0046983
	Cma19g00230	301	PANTHER	TRANSCRIPTION FACTOR BHLH71	1	300	-	-
	Cma19g00230	301	Coils	Coil	147	167	-	-
	Cma19g00230	301	PANTHER	MAX DIMERIZATION, MAD	1	300	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cma12g01085	Cma-Chr12:8570585	Cma19g00230	Cma-Chr19:1582171	7.69E-63	dispersed
	Cma14g02163	Cma-Chr14:14838337	Cma19g00230	Cma-Chr19:1582171	7.19E-53	dispersed
	Cma19g00230	Cma-Chr19:1582171	Cma02g01618	Cma-Chr2:9191464	6.56E-139	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	36874	PF00010	HLH	1.00E-10	No_clan	Cma	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cma19g00230	-		-	cmax:111466851	567.0