Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00236 ATGACAGACTACCGAGTGCCACCGGCGATGAATCTCTGGGCGGATGAGAACGCGTCGATGATGGACGTGTTCACAAGCACCGATCTGAGTTCCTTATGGGTTACGCCGCCGCTGCCGCAGCCACAGCCGCAGTCGCAGCCGCTTTATTCCTCTGTTTCCACGGCGATTGAACCAAGTAAACCCGTCGGTCAAGAGCCGCCGCCGCCGTCCTTAGCGGTTTTCAACCAGGAGACTCTGATGCAGCGCCTCCAAGTGCTGATTGAAGGCGCTCAAGAGAGCTGGACTTACGCTATCTTCTGGCAATCTTCGTACTACTCCGGTAGTAACCTCTTAGGGTGGGGCGATGGATACTACAAAGGCGAAGAAGATAAAGAGAAAGCTAAATCGAGCACCTCAAAAACAGAGCAAGAGCGCCGGAAGACGGTACTTCGCGAACTCAACTCTCTCATTTCTGGTTCCCCTGCCTCCGATGACGACGCCGTCGACGAGGTCGTCACCGACACCGAGTGGTTCTTCTTGGTGTCGATGACTCAATCGTTCGTCTCCGGTGTCGGATTACCGGGACAAGCATTTTTCGATTCGAACCCTATTTGGATTAGCGGTTCCGATCGGCTTGCGAGCTCGTTCTGTGAACGAGCTCGTCAGGGTCAGATTTTCGGATTGCAAACAATGGTTTGTATTCCGTTGGTGAACGGCGTTGTTGAATTAGGGTCGAGCGATTTGATTTTCCTGAACTCTGATCTGATGAATAGGGTTAGGGTTTTGTTTAATTTCAATAATCTGGAGGCGGAGACTTGGCCAATTAGTGGCGAGAATGACCCGTCGCTTTGGATCACTGAGCCATTATCAAACGCCATTGAAATTAAGGACGCCATTGAAACTCCAAGTTCTTCTGTTCCTCCTCCGCCTCAAAAGAGTAACCGGCAGCCGCAGCCGGTTCAGAAACAGAGCTTCTTAACCCCCAAGGAATTGAACTTCTCTGAATTTGGGTTTGAGAATGGCAGCTTGAAGGCGGAATCCGGGGAGATTCTTAATTTTAGTGGCACCAAGAGGAATTCTCACCCCAACACAGACAACATCTTGCCTTCCGGCAACCCGGGCGGCAGCGATGAGAACAAGAAGAAGACATCCAGTAACGAAGAGGGGATGCTTTCTTTTACATCTGGTGTGATTCTTCCATCCTCTGGCACCGCAAAATCGACCGGTTGCATTGTCGATTCCGACCACTCCGACCTCGAAGCATCGGTGATCCGTGAGGTGGAGAGTAATAGAGCGGTGGAGCCGGAGAAACGGCCGCGAAAACGAGGTCGAAAACCAGCAAATGGTAGAGAAGAACCATTGAATCATGTTGAAGCAGAGAGGCAGAGAAGAGAAAAACTAAACCAAAGATTCTATGCTCTTAGAGCTGTGGTTCCAAATGTATCAAAAATGGACAAAGCTTCACTTCTTGGCGATGCTATTTCTTACATTAATGAGCTCAAAGGGAAGCTTCAAGCTGCAGAATCAGATAAGGAGGAGCTACAAAAGCAATTGGATTCAGTGAAGAAGTTCATATCAAGCTCAGATCAAGAGGTAAAAGCGTCGAATTACGGCATCGAAACCGATATCGACGTGAAGATAATCAGCTGGGACGCGATGATCCGGATCCAATCTAGTAAGAAGAACCATCCCGCTGCACGGCTGATGGCGGCATTGGAGGAACTTGATTTGGATATCAGCCATGCGAGCATTTCAGTTGTGAATGATTTGATGATCCAACAAGCAACTGTGAAGATGGGCAGTCGGTTGTACACTCAGGAGCAGCTCAGGATAGCTCTGTCGTCGAAAATGGGCACTGCTCGGTAG 1845 49.65 MTDYRVPPAMNLWADENASMMDVFTSTDLSSLWVTPPLPQPQPQSQPLYSSVSTAIEPSKPVGQEPPPPSLAVFNQETLMQRLQVLIEGAQESWTYAIFWQSSYYSGSNLLGWGDGYYKGEEDKEKAKSSTSKTEQERRKTVLRELNSLISGSPASDDDAVDEVVTDTEWFFLVSMTQSFVSGVGLPGQAFFDSNPIWISGSDRLASSFCERARQGQIFGLQTMVCIPLVNGVVELGSSDLIFLNSDLMNRVRVLFNFNNLEAETWPISGENDPSLWITEPLSNAIEIKDAIETPSSSVPPPPQKSNRQPQPVQKQSFLTPKELNFSEFGFENGSLKAESGEILNFSGTKRNSHPNTDNILPSGNPGGSDENKKKTSSNEEGMLSFTSGVILPSSGTAKSTGCIVDSDHSDLEASVIREVESNRAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKGKLQAAESDKEELQKQLDSVKKFISSSDQEVKASNYGIETDIDVKIISWDAMIRIQSSKKNHPAARLMAALEELDLDISHASISVVNDLMIQQATVKMGSRLYTQEQLRIALSSKMGTAR 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1667766 1669610 + CmaCh19G002360.1 Cma19g00236 314924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00236 614 PANTHER MYC 13 610 IPR045084 GO:0003700|GO:0006355
Cma19g00236 614 MobiDBLite consensus disorder prediction 415 454 - -
Cma19g00236 614 PANTHER TRANSCRIPTION FACTOR MYC2 13 610 - -
Cma19g00236 614 MobiDBLite consensus disorder prediction 293 319 - -
Cma19g00236 614 CDD bHLH_AtAIB_like 441 516 - -
Cma19g00236 614 Pfam Helix-loop-helix DNA-binding domain 448 493 IPR011598 GO:0046983
Cma19g00236 614 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 447 519 IPR036638 GO:0046983
Cma19g00236 614 MobiDBLite consensus disorder prediction 346 372 - -
Cma19g00236 614 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 79 256 IPR025610 -
Cma19g00236 614 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 444 493 IPR011598 GO:0046983
Cma19g00236 614 Gene3D - 443 521 IPR036638 GO:0046983
Cma19g00236 614 SMART finulus 450 499 IPR011598 GO:0046983
Cma19g00236 614 Coils Coil 490 517 - -
Cma19g00236 614 MobiDBLite consensus disorder prediction 346 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g02113 Cma-Chr14:14573817 Cma19g00236 Cma-Chr19:1667766 2.49E-25 dispersed
Cma17g00504 Cma-Chr17:3297860 Cma19g00236 Cma-Chr19:1667766 5.68E-26 dispersed
Cma19g00070 Cma-Chr19:402667 Cma19g00236 Cma-Chr19:1667766 1.50E-13 dispersed
Cma16g01157 Cma-Chr16:8881798 Cma19g00236 Cma-Chr19:1667766 0 wgd
Cma19g00236 Cma-Chr19:1667766 Cma02g01614 Cma-Chr2:9172765 0 wgd
Cma19g00236 Cma-Chr19:1667766 Cma06g00648 Cma-Chr6:3215044 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36876 PF14215 bHLH-MYC_N 1.10E-51 CL0161 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00236 K13422 - csv:101218165 884.019