Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma19g00242 | ATGGCTGGCCTGGATTTAAGCAATCACTATATTCACCAACTTCAAAGGCCTGATTTCAACCACCACCACCATCACCACCACCAGCCACCACCGCCTCCTCCACCCGATTCTCAATCGTGTCATGACACTGAATCTCATCATCCCTCCACCGATATGGTGGCATCTCGCCGACCACGCGGTCGTCCACCCGGTTCCAAAAACAAACCAAAGCCACCGGTCATCATAACTCGAGAAAGCGCAAATACCCTAAGAGCTCATATTCTCGAGATCGGCGGTGGCTGTGACGTCTTCGATAGCATCGCTTCCTACGCTCGCCGCCGTCAGCGTGGGATCTGCATCTTGAGTGGCACCGGAACAGTAACGAATGTCAACTTACGACAACCGACCGCGGCGGGGTCCGTGTTAACCCTACAAGGTAGGTTTGAGATATTATCGCTCACTGGATCTTTCTTACCGCCACCGGCTCCTCCCGGCGCCACCAGTTTGACCATATACTTGGCTGGTGGACAAGGGCAAGTGGTCGGTGGTAACGTCATCGGAGAATTGATGGCAGCCGGACCAGTGACGGTGATCACTGCTTCGTTTACAAATGTAGCATACGAGAGATTGCCACTAGAAGACGAAGAACAAGAACAAGAACAAGAACAAGAACAAGATCAGATTCAGATGCAACCACCGACATCACACGGAAACAATAACCCATTTCCAGATCCATCTTCAGGGCTTCAGTTCTTCAATTTGCCTGTAAATATGCAGAATCAAATTCAGCTACCATTCTGA | 780 | 50.64 | MAGLDLSNHYIHQLQRPDFNHHHHHHHQPPPPPPPDSQSCHDTESHHPSTDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEIGGGCDVFDSIASYARRRQRGICILSGTGTVTNVNLRQPTAAGSVLTLQGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVIGELMAAGPVTVITASFTNVAYERLPLEDEEQEQEQEQEQDQIQMQPPTSHGNNNPFPDPSSGLQFFNLPVNMQNQIQLPF | 259 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 1713777 | 1714556 | - | CmaCh19G002420.1 | Cma19g00242 | 314930 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma19g00242 | 259 | MobiDBLite | consensus disorder prediction | 217 | 243 | - | - | |
Cma19g00242 | 259 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 80 | 209 | - | - | |
Cma19g00242 | 259 | MobiDBLite | consensus disorder prediction | 20 | 74 | - | - | |
Cma19g00242 | 259 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN | 1 | 258 | - | - | |
Cma19g00242 | 259 | PIRSF | ESCAROLA | 4 | 257 | IPR014476 | GO:0003680 | |
Cma19g00242 | 259 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 84 | 197 | IPR005175 | - | |
Cma19g00242 | 259 | Gene3D | - | 83 | 218 | - | - | |
Cma19g00242 | 259 | MobiDBLite | consensus disorder prediction | 206 | 243 | - | - | |
Cma19g00242 | 259 | MobiDBLite | consensus disorder prediction | 40 | 54 | - | - | |
Cma19g00242 | 259 | CDD | DUF296 | 84 | 167 | IPR005175 | - | |
Cma19g00242 | 259 | ProSiteProfiles | PPC domain profile profile. | 80 | 218 | IPR005175 | - | |
Cma19g00242 | 259 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 1 | 258 | IPR014476 | GO:0003680 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00980 | Cma-Chr8:6130529 | Cma19g00242 | Cma-Chr19:1713777 | 1.55E-92 | dispersed | |
Cma14g01956 | Cma-Chr14:13756219 | Cma19g00242 | Cma-Chr19:1713777 | 3.97E-92 | dispersed | |
Cma17g00057 | Cma-Chr17:253494 | Cma19g00242 | Cma-Chr19:1713777 | 1.57E-90 | dispersed | |
Cma19g00242 | Cma-Chr19:1713777 | Cma15g00103 | Cma-Chr15:479122 | 6.01E-67 | dispersed | |
Cma16g01151 | Cma-Chr16:8853135 | Cma19g00242 | Cma-Chr19:1713777 | 8.04E-94 | wgd | |
Cma19g00242 | Cma-Chr19:1713777 | Cma02g01607 | Cma-Chr2:9151665 | 4.17E-119 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma19g00242 | - | - | cmo:103503535 | 367.466 |