Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00242 ATGGCTGGCCTGGATTTAAGCAATCACTATATTCACCAACTTCAAAGGCCTGATTTCAACCACCACCACCATCACCACCACCAGCCACCACCGCCTCCTCCACCCGATTCTCAATCGTGTCATGACACTGAATCTCATCATCCCTCCACCGATATGGTGGCATCTCGCCGACCACGCGGTCGTCCACCCGGTTCCAAAAACAAACCAAAGCCACCGGTCATCATAACTCGAGAAAGCGCAAATACCCTAAGAGCTCATATTCTCGAGATCGGCGGTGGCTGTGACGTCTTCGATAGCATCGCTTCCTACGCTCGCCGCCGTCAGCGTGGGATCTGCATCTTGAGTGGCACCGGAACAGTAACGAATGTCAACTTACGACAACCGACCGCGGCGGGGTCCGTGTTAACCCTACAAGGTAGGTTTGAGATATTATCGCTCACTGGATCTTTCTTACCGCCACCGGCTCCTCCCGGCGCCACCAGTTTGACCATATACTTGGCTGGTGGACAAGGGCAAGTGGTCGGTGGTAACGTCATCGGAGAATTGATGGCAGCCGGACCAGTGACGGTGATCACTGCTTCGTTTACAAATGTAGCATACGAGAGATTGCCACTAGAAGACGAAGAACAAGAACAAGAACAAGAACAAGAACAAGATCAGATTCAGATGCAACCACCGACATCACACGGAAACAATAACCCATTTCCAGATCCATCTTCAGGGCTTCAGTTCTTCAATTTGCCTGTAAATATGCAGAATCAAATTCAGCTACCATTCTGA 780 50.64 MAGLDLSNHYIHQLQRPDFNHHHHHHHQPPPPPPPDSQSCHDTESHHPSTDMVASRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEIGGGCDVFDSIASYARRRQRGICILSGTGTVTNVNLRQPTAAGSVLTLQGRFEILSLTGSFLPPPAPPGATSLTIYLAGGQGQVVGGNVIGELMAAGPVTVITASFTNVAYERLPLEDEEQEQEQEQEQDQIQMQPPTSHGNNNPFPDPSSGLQFFNLPVNMQNQIQLPF 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1713777 1714556 - CmaCh19G002420.1 Cma19g00242 314930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00242 259 MobiDBLite consensus disorder prediction 217 243 - -
Cma19g00242 259 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 209 - -
Cma19g00242 259 MobiDBLite consensus disorder prediction 20 74 - -
Cma19g00242 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 258 - -
Cma19g00242 259 PIRSF ESCAROLA 4 257 IPR014476 GO:0003680
Cma19g00242 259 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Cma19g00242 259 Gene3D - 83 218 - -
Cma19g00242 259 MobiDBLite consensus disorder prediction 206 243 - -
Cma19g00242 259 MobiDBLite consensus disorder prediction 40 54 - -
Cma19g00242 259 CDD DUF296 84 167 IPR005175 -
Cma19g00242 259 ProSiteProfiles PPC domain profile profile. 80 218 IPR005175 -
Cma19g00242 259 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 258 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00980 Cma-Chr8:6130529 Cma19g00242 Cma-Chr19:1713777 1.55E-92 dispersed
Cma14g01956 Cma-Chr14:13756219 Cma19g00242 Cma-Chr19:1713777 3.97E-92 dispersed
Cma17g00057 Cma-Chr17:253494 Cma19g00242 Cma-Chr19:1713777 1.57E-90 dispersed
Cma19g00242 Cma-Chr19:1713777 Cma15g00103 Cma-Chr15:479122 6.01E-67 dispersed
Cma16g01151 Cma-Chr16:8853135 Cma19g00242 Cma-Chr19:1713777 8.04E-94 wgd
Cma19g00242 Cma-Chr19:1713777 Cma02g01607 Cma-Chr2:9151665 4.17E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00242 - - cmo:103503535 367.466