Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00254 ATGGCGGACCGTGGATCTTATGGCTTGGCTCCTCGTCTAGATATTGACCAGTTATTGATAGAAGCAAAACATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTATCCTAAGTTTCAAATTGCTTCAGAGCCTCCAGATAGACCTTCAAGTGGGTCACTTTTTCTCTTTGATCGAAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACAGTAAGAGAAGCACATGAGAAGCTGAAGGTTGGAAGCATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATAGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATATTGGAGCTGTCGTTGAGACTGATGAGGTTTCATCAAGTTCACAGAAGAGCAGCCCTACGAGTGCTAGCTATTCCAGCAGTTATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCAACTAGCCCTTTGACACCATTTTGTGAAGATGGTGATACTGAAGACACCGGCCAAGCAACTTCAAGATTTCGCTCATTTCCCACGTCACCAAAAATGGGAAATGGTCTTCTGATGAATAAACAAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCTTCTTCCAACACAGCAGTTCCTGCTGTGGATTATGTATCACAAGTTCAGAAAGATGTACTTGGGGGTAACATTTGTGGTACCAATGTGACGGATTCTCAGAAGACGCTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACATTGTACAACTGGATTTCAGACTGTACCTTCTCATGTTTTATCCTCTCTGATTGAACCTGTTTCTTCTGGAATTGTCGTTGGACAAGAGAATTCAATTCCTGGCGAGCCTTCAACCAGTAATAGTGCTATTACAGAGGATTTTGGGAGTTCTCTGACAATGAACTCAAATTGGCAGGTTTCTTTTGAAGACAATACTTCGTCCTTTTCAAAAGAGTATGTTGACCAGTTTCCAGAATTGTATTCAGTTTATGGCATAGATAGCAGGTTAACTGAGCAGAAATCTCATAATGCAACTTTTGGAAGTGGTCATGAGATGTCTTGTGCTCATCCTGGCATAGAGAATGAGGAGATTTTGCCAAACAACCTTGAATTACAGTTCAAAGAAGGAGAATCGTATTCTGCTATGAGGTTGAGTTCTGAAAATGATACATCTAAAGAAGGTACCGTTGGCTATTCTTTGAGTTTGAAACAATCATTAATAGACGGAGAGGAGAGTTTAAAGAAAGTCGACAGCTTCTCGAGGTGGGTATCCAGAGAGCTTGTCGAAGTTGATGATTTGCACATGCATCCATCATCTGGCTTGTCTTGGAGCACCGTAGAATGTGGTGATATGGTAGATAATTCATCATTAAGCCCTTCTCTTTCTGAAGACCAGCTTTTCAGTATAATAGAATTTTCTCCAAAGTCGACACTTGCAGATTTGGAAACTGAGGTTGTGATTATAGGAAAGTTTCTGGGGAACAATCATGGCACAAAATGTTATTGGTCATGTATGTTTGGGGAAGTCGAAGTTCCTGCAGAGGTTTTGGCTGATGGGATCCTATGCTGCCATGCACCACCACATAGTGTTGGGCAAGTCCCTTTTTATGTCACATGTTCCAACAGATTAGCATGCAGTGAGATTCGTGAGTTTGATTACTTGGCAGGCTCTGCTCAAGATGTCGATGTTACCGAAGTATATACTGCTGGTGCTACAGAGGAATTATATTTGCATATGCGATTGGAGAGGTTACTGTCCCATAGATCTTCAAATCCTCCAAATAATCTCTCTGAAGGTGCTTTGGAGAAACGGAACTTAATCAGAGAGCTTATCTCAATAAAAGAAGAAGAAGATTGTCATGGGGAAGAGCCAAATTCTCATAATGTTCAAATTCAGCATCAAAACAAGGAGTTTCTTTTTGTAAAGCTGATGAAAGAAAAAGTGTACTCATGGCTTATCCGCAAAGTCATTGAAGGTGGCAAAGGTCCTCATATATTGGATGATGAGGGACAGGGGTTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCAATCCGACCAATTGTCGCTGCAGGAGTGAGCATAAACTTCCGAGACGTTAACGGATGGACTGCTCTCCATTGGGCAGCATTCTGTGGCAGGGAGTTGACAGTTGGAACCCTTATAACATTGAATGCTGCTCCTGGATTGCCGGCTGATCCTTCTCCAGAAAATCCTTTGGGGATACCGCCATCTGAACTTGCGTCGATGAATGGGCACAAAGGGATTGCTGGTTTCCTTGCAGAGTCATCATTGACCAGCTATATCGAATCCATATCAATGGGGGAGACCGTAAAAGATGGTGTGCTGGACGTTTCAAAGAGGAAACCTGTGCATACTGTTTCTGAACGAAGGGCAACACCGATAAGTGATGGTTTTATGCCTGCTGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGGCGTATACATCTGATGTTTAGAATGCAGTCATTTCAGAGGAAAAAATTATCGGAGTGTAGTCCTGATGAACTTGGATCCTCAGATGATACTGCTATTTCATTTGCCAAAGCCAGGGCACGTAAGTCTGGACTAAGTAACAGCCCGGCCCATGCCGCTGCAGTTCACATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAGTTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCACGTGAGAGGACACCAGGTGAGGAAGCAATATAAAAAGATCGTCTGGTCGGTAGGCATATTAGACAAGATTATTTTGAGATGGAGACGGAAGGGGAGTGGTTTGCGAGGTTTCCGATCAGATGCAGCTGCGAAGAATCCATCTGCCGCCGTGTTGGAACCGCCTAAAGAGGATGATTATGATTTTCTGGCGAAAGGAAGGAGGCAGAATGAGGAGAGATTTCAAAAAGCACTGACTAGAGTCAAGTCCATGGCTCAGTATCCCGAGGGACGAGACCAATACCGTAGGCTTCTTACCGTCGTTCAAAAGTGCCAAGAAACCAAGGCAAGTAGTATGGCTATTACTAGCACTAGAGAAGAGATAATAGAAGGCGATGACATGATTGATATCGACTCGCTTCTGGACGACGATGCTTTGATGTCTATGACATTTGATTGA 3273 42.8 MADRGSYGLAPRLDIDQLLIEAKHRWLRPAEICEILRNYPKFQIASEPPDRPSSGSLFLFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNIGAVVETDEVSSSSQKSSPTSASYSSSYNQAASENADSPSPTSPLTPFCEDGDTEDTGQATSRFRSFPTSPKMGNGLLMNKQDAGQSNFYFPHSSSNTAVPAVDYVSQVQKDVLGGNICGTNVTDSQKTLSSASWEEILQHCTTGFQTVPSHVLSSLIEPVSSGIVVGQENSIPGEPSTSNSAITEDFGSSLTMNSNWQVSFEDNTSSFSKEYVDQFPELYSVYGIDSRLTEQKSHNATFGSGHEMSCAHPGIENEEILPNNLELQFKEGESYSAMRLSSENDTSKEGTVGYSLSLKQSLIDGEESLKKVDSFSRWVSRELVEVDDLHMHPSSGLSWSTVECGDMVDNSSLSPSLSEDQLFSIIEFSPKSTLADLETEVVIIGKFLGNNHGTKCYWSCMFGEVEVPAEVLADGILCCHAPPHSVGQVPFYVTCSNRLACSEIREFDYLAGSAQDVDVTEVYTAGATEELYLHMRLERLLSHRSSNPPNNLSEGALEKRNLIRELISIKEEEDCHGEEPNSHNVQIQHQNKEFLFVKLMKEKVYSWLIRKVIEGGKGPHILDDEGQGLIHLAAALGYDWAIRPIVAAGVSINFRDVNGWTALHWAAFCGRELTVGTLITLNAAPGLPADPSPENPLGIPPSELASMNGHKGIAGFLAESSLTSYIESISMGETVKDGVLDVSKRKPVHTVSERRATPISDGFMPADLSLKDSLTAVCNATQAAGRIHLMFRMQSFQRKKLSECSPDELGSSDDTAISFAKARARKSGLSNSPAHAAAVHIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGILDKIILRWRRKGSGLRGFRSDAAAKNPSAAVLEPPKEDDYDFLAKGRRQNEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCQETKASSMAITSTREEIIEGDDMIDIDSLLDDDALMSMTFD 1090
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1804145 1820054 - CmaCh19G002540.1 Cma19g00254 314942

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00254 1090 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Cma19g00254 1090 MobiDBLite consensus disorder prediction 200 220 - -
Cma19g00254 1090 Gene3D Immunoglobulins 497 592 IPR013783 -
Cma19g00254 1090 SUPERFAMILY E set domains 504 588 IPR014756 -
Cma19g00254 1090 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1090 - -
Cma19g00254 1090 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1090 - -
Cma19g00254 1090 Gene3D - 913 960 - -
Cma19g00254 1090 MobiDBLite consensus disorder prediction 147 188 - -
Cma19g00254 1090 MobiDBLite consensus disorder prediction 147 220 - -
Cma19g00254 1090 ProSiteProfiles IQ motif profile. 936 960 IPR000048 GO:0005515
Cma19g00254 1090 SMART CG_1_2 18 136 IPR005559 GO:0003677
Cma19g00254 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 913 963 IPR027417 -
Cma19g00254 1090 Gene3D - 668 844 IPR036770 -
Cma19g00254 1090 Pfam IQ calmodulin-binding motif 914 933 IPR000048 GO:0005515
Cma19g00254 1090 Pfam IQ calmodulin-binding motif 938 957 IPR000048 GO:0005515
Cma19g00254 1090 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Cma19g00254 1090 SUPERFAMILY Ankyrin repeat 688 798 IPR036770 -
Cma19g00254 1090 SMART iq_5 912 934 IPR000048 GO:0005515
Cma19g00254 1090 SMART iq_5 935 957 IPR000048 GO:0005515
Cma19g00254 1090 ProSiteProfiles IQ motif profile. 913 942 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00254 K21596 CAMTA; calmodulin-binding transcription activator - csv:101203707 1777.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00177 Cma-Chr8:990472 Cma19g00254 Cma-Chr19:1804145 1.38E-46 dispersed
Cma17g01441 Cma-Chr17:9468880 Cma19g00254 Cma-Chr19:1804145 2.91E-45 dispersed
Cma19g00254 Cma-Chr19:1804145 Cma15g00319 Cma-Chr15:1481612 1.53E-06 dispersed
Cma14g01565 Cma-Chr14:11743952 Cma19g00254 Cma-Chr19:1804145 1.38E-61 transposed
Cma16g00713 Cma-Chr16:3713192 Cma19g00254 Cma-Chr19:1804145 7.11E-62 transposed
Cma11g01650 Cma-Chr11:10856550 Cma19g00254 Cma-Chr19:1804145 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma11g01650 . 1 1091 CAMTA Transcription Factor Family AT5G64220 52.9 7.0e-269 924.5
Cma19g00254 . 1 1090 CAMTA Transcription Factor Family AT5G64220 52.5 3.8e-267 918.7
Cma17g01441 . 6 950 CAMTA Transcription Factor Family AT1G67310 50.2 2.0e-244 843.2
Cma08g00177 . 5 887 CAMTA Transcription Factor Family AT1G67310 51.3 1.6e-233 807.0
Cma08g01266 CCT,CST 11 629 CAMTA Transcription Factor Family AT4G16150 53.3 4.6e-192 669.1
Cma17g00358 CCT,CST 11 627 CAMTA Transcription Factor Family AT4G16150 51.8 2.5e-185 646.7
Cma08g01266 CCT,CST 34 905 CAMTA Transcription Factor Family AT3G16940 54.9 4.2e-261 898.3
Cma17g00358 CCT,CST 34 903 CAMTA Transcription Factor Family AT3G16940 52.8 1.7e-246 849.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36878 PF03859 CG-1 9.00E-51 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00254 Cma_Chr19 FPKM 23.559021 27.540083 18.274105 17.630592 15.925597 16.976282 17.546833 22.748791 22.751312 23.395842