Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00262 ATGGCGAAAGTTTGTTTCATCTTGGTTGTAACTACGGTGGTGGTGCTTGGCTTGGCCGCCTCGACCGTGCACGGTCAAGGCACACGGCTCGGGTTCTATCATGCCAAGTGCCCGAACGCTGAATCCATCGTTAGATCCACCGTCCAATCCCATTTCATGAAGGATCCCACTATCTCTCCTGGGTTATTGAGAATGCACTCCCATGACTGCTTTGTTCGAGGGTGTGATGCTTCTGTGCTTCTTGATGGTCCTGATTCCGAGAGGACGGCTGTGCCTAACCTTACTTTGAAAGGGTTTGAGGTCATTGACGATGCCAAGTTGCAACTTGAAGATGCTTGCCCTGGTGTCGTGTCGTGTGCTGATATTCTTGCTCTTGCTGCTCGTGACTCCGTTGTTCTGACGGGTGGATTAAGATGGGAAGTTCCGACCGGACGACGAGATGGCAGAATTTCATTGGTTTCAGAAGTGAACTTGCCAAGTTTTTCCGATTCCATTGAAGTTCAAAAAGAGAAATTTAGGGTAGTGGGTCTCAACACTCATGACCTCGTCACTCTTGTAGGATCCCATACGATCGGAACTGCATCATGTCGTTTTTTCAGTTATAGACTCTACAACTTCACGACCACCACCGAAAGTGGCGCCGATCCTACCATTAACCCATCGCTTGTCGGTCGGCTACGAGAACTTTGCCCTGAAGACGGAGATGGCTCAAATAGAGTCGAGCTCGACATTGGTAGTCCCGAAAAGTTCGACCTGTCGTTCTACTCAAACTTGAGGCGTGGGGGTGGGATATTAGAGTCCGATCAGAAGCTGTGGAACGATGACTCTACTCGGCCGACCGTCCGACACTACTTGGGTTCGAGGATTCTAAGGGGACGTTCCAACTTTAGAGTTGAGTTTGGGAAATCAATGGTGAAAATGAGCAACATTGACGTTAAAACTGGCATTGAGGGTGAAATCCGAAGGGTTTGCTCCGAGGTTAATTGA 987 49.14 MAKVCFILVVTTVVVLGLAASTVHGQGTRLGFYHAKCPNAESIVRSTVQSHFMKDPTISPGLLRMHSHDCFVRGCDASVLLDGPDSERTAVPNLTLKGFEVIDDAKLQLEDACPGVVSCADILALAARDSVVLTGGLRWEVPTGRRDGRISLVSEVNLPSFSDSIEVQKEKFRVVGLNTHDLVTLVGSHTIGTASCRFFSYRLYNFTTTTESGADPTINPSLVGRLRELCPEDGDGSNRVELDIGSPEKFDLSFYSNLRRGGGILESDQKLWNDDSTRPTVRHYLGSRILRGRSNFRVEFGKSMVKMSNIDVKTGIEGEIRRVCSEVN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1873105 1874617 + CmaCh19G002620.1 Cma19g00262 314950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00262 328 Gene3D - 32 328 - -
Cma19g00262 328 ProSiteProfiles Plant heme peroxidase family profile. 27 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 SUPERFAMILY Heme-dependent peroxidases 29 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 CDD secretory_peroxidase 29 327 IPR033905 GO:0004601|GO:0042744
Cma19g00262 328 PANTHER PEROXIDASE 25-RELATED 8 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Cma19g00262 328 PANTHER PEROXIDASE 8 326 - -
Cma19g00262 328 Pfam Peroxidase 44 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 Gene3D Peroxidase, domain 2 159 307 - -
Cma19g00262 328 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00262 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00262 Cma-Chr19:1873105 Cma19g00264 Cma-Chr19:1878536 7.57E-157 dispersed
Cma19g00262 Cma-Chr19:1873105 Cma19g00263 Cma-Chr19:1876371 5.68E-151 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00262 K00430 - csv:101202985 525.013