Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00268 ATGAGCGGGCGGATCGTGAGCCAAGAGGATCTGATGCAGTCGGAGCGGCACAGCGAGGCGGGCAGCGTTGCACCGCCTTCGAAGGTGGGCGTGCCGCCGAGGAAGAACGCGTGGGAGGAGTTTAAATCTGTGGTGAATGAGACTTTCTTCTCCGATCAGCCTCTTAGGCATTTCAAGGACCAGCCCAAGCGCAAGAAAGTTGCTCTCTTTGTGCAAGGCCTCTTCCCTGTGTTCCAATGGGGACGGGGATATAACTTTAGTAAGTTCAAAGGGGACCTCATTGCTGGCTTAACCATTGCTAGTCTTTGTATTCCTCAGGATATTGGATATGCCAAGCTTGCCAATTTGCCAGCTGAAAATGGACTTTATAGTAGCTTTGTCCCACCATTGGTCTACGCCGTGATGGGAAGCTCCAGAGACATCGCAATCGGCCCGGTCGCCGTCGTGTCACTTTTACTCGGAACACTCGTATCGCAGGTATACGACCCGGTGAAAGAAGCTGAAGAATACAAACGGCTAGCTTTCACGGCAACTTTCTTCGCCGGAGTAACTCAGCTAGCTCTAGGCTTCCTCCGGCTAGGATTCTTGATCGACTTTCTATCACATGCTGCGATTGTTGGGTTCATGGGTGGCGCCGCTGTCACCATTGCCCTCCAACAGCTGAAAGGTCTTCTCGGCATAAAAAACTTCACCAAGAAAACTGATATCATTTCAGTGATGCGCTCAGTTTGGAGTAATGTGCAGCATGGGTGGAATTGGCCGACTATACTGATAGGGGTATCATTTTTGGTGTTCCTTTTAGCTACCAAATATATAGGTAAGAAGCATAAGAAACTGTTTTGGATACCTGCTATTGCGCCCTTGACATCGGTGATACTCTCAACCTTTTTTGTGTATATCACTCGAGCTGATAAAGATGGAGTTCAGATTGTAAAACACATAGATAAAGGAATAAATCCTTCATCCCTTGGTAAGATCTTCTTCCATGGAGACAATCTCATCAAAGGTTTCAAAATTGGAGTGGTTGCTGGTTTGATTGCCCTAACGGAAGCTGTGGCCATTGCAAGAACATTTGCAGACTTAAAGGACTACGAGATCAATGGTAACAAAGAAATGATGGCTCTTGGAACCATGAACATTGCTGGCTCCATGACTTCTTGCTATGTAGCCACAGGATCATTCTCCCGGTCGGCTGTGAACTACATGGCTGGCTGCAGCACACCGATGTCGAACATTGTCATGGCATGCGTCGTTCTCTTGACCTTAGAGCTCATCACACCCCTTTTCAAGTATACCCCTAATGCCATTCTTGCCTCCATCATCATTTGCGCCGTGATTGGGCTCATCGACATCGACGCCGTGATGTTGCTATGGAAGATCGACAAATTCGACTTCATTGCTTGCATGGGAGCTTTCTTCGGCGTCGTCTTTGATTCGGTCGAGATTGGTCTTCTCATTGCTGTGAGTCTGTCGCTGTTCAAAATTCTATTGCAAGTGACGAGACCTCGCATTGCTTTGCTTGGGAAGCTCCCAAAGATTGCTATTTTTAGAAACATTTTGCAATACCCTGGGGCAAAGAGGATTGATGGAATCCTCATGGTTAGGGTTGATTCTTCTATATACTTCTCCAATGCCAACTATGTCAAAGAAAGGATACTGAGATGGCTAGCAGATGAAACAGAGAAGCTCAAAGACCAATCTCTCCCCATCAAAGTCGTGATCATCGACATGTCTCCGGTATCCGATATCGACACAAGTGGCATCCATGCGATCGAGGGATTGTACTCTCATTTGCAGAAGAAGGAAATTGAGCTTGCACTTGCAAATCCAGGCCCAGTGATCATGGAGAAGCTCTTAGCCGCCAACTTCGACAAACTCATTGGAGAAGAAAACATTTTCCTTAGTGTCAACGAAGCTATTAAGACTTATGCCCCAAATGCGGCTCTTGATCCTTAG 1956 46.98 MSGRIVSQEDLMQSERHSEAGSVAPPSKVGVPPRKNAWEEFKSVVNETFFSDQPLRHFKDQPKRKKVALFVQGLFPVFQWGRGYNFSKFKGDLIAGLTIASLCIPQDIGYAKLANLPAENGLYSSFVPPLVYAVMGSSRDIAIGPVAVVSLLLGTLVSQVYDPVKEAEEYKRLAFTATFFAGVTQLALGFLRLGFLIDFLSHAAIVGFMGGAAVTIALQQLKGLLGIKNFTKKTDIISVMRSVWSNVQHGWNWPTILIGVSFLVFLLATKYIGKKHKKLFWIPAIAPLTSVILSTFFVYITRADKDGVQIVKHIDKGINPSSLGKIFFHGDNLIKGFKIGVVAGLIALTEAVAIARTFADLKDYEINGNKEMMALGTMNIAGSMTSCYVATGSFSRSAVNYMAGCSTPMSNIVMACVVLLTLELITPLFKYTPNAILASIIICAVIGLIDIDAVMLLWKIDKFDFIACMGAFFGVVFDSVEIGLLIAVSLSLFKILLQVTRPRIALLGKLPKIAIFRNILQYPGAKRIDGILMVRVDSSIYFSNANYVKERILRWLADETEKLKDQSLPIKVVIIDMSPVSDIDTSGIHAIEGLYSHLQKKEIELALANPGPVIMEKLLAANFDKLIGEENIFLSVNEAIKTYAPNAALDP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1918558 1924962 - CmaCh19G002680.1 Cma19g00268 314956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00268 651 SUPERFAMILY SpoIIaa-like 526 642 IPR036513 -
Cma19g00268 651 TIGRFAM sulP: sulfate permease 76 639 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma19g00268 651 Pfam Sulfate permease family 89 469 IPR011547 GO:0016021
Cma19g00268 651 Pfam STAS domain 522 639 IPR002645 -
Cma19g00268 651 Gene3D STAS domain 516 646 IPR036513 -
Cma19g00268 651 PANTHER SULFATE TRANSPORTER 1.2-LIKE 13 650 - -
Cma19g00268 651 PANTHER SULFATE TRANSPORTER 13 650 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma19g00268 651 ProSiteProfiles STAS domain profile. 521 643 IPR002645 -
Cma19g00268 651 MobiDBLite consensus disorder prediction 1 33 - -
Cma19g00268 651 CDD STAS_SulP_like_sulfate_transporter 522 636 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01419 Cma-Chr1:10010272 Cma19g00268 Cma-Chr19:1918558 0 dispersed
Cma04g02315 Cma-Chr4:16105844 Cma19g00268 Cma-Chr19:1918558 0 dispersed
Cma19g00268 Cma-Chr19:1918558 Cma08g00327 Cma-Chr8:1868717 0 dispersed
Cma19g00268 Cma-Chr19:1918558 Cma15g00724 Cma-Chr15:3515599 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00268 K17470 - csv:101202746 1156.35