Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00277 ATGGCGAAGTTTATGAATTTTCTCTATCTTTTTATGTTCTTTGGTTGCTTTGCACCCTTTTCTCAAGCTCAGCTCCAATTTGGATTCTATGCTCGATCTTGTCCTTCTGCTGAGTCCATTGTTCGCTCTGTTGTAAACGACGCTGTTCGAAACGATGGCAATATGGCTGCCGTGTTGCTCCGTCTCCATTTTCATGACTGCTTCGTTGAGGGTTGCGACGGTTCAATCTTGATCGACACGGCACCGAACCCGGAAAAGGGTGCTTTTGGGCATCAAGGGGTGGGGGGATTCGAGGTGATAGAGAGAGCCAAGGAAGAATTGGAAAGCCAATGCCCAGGAGTGGTTTCTTGTGCAGACATCGTGGCTATGGCGGCTAGAGACGCCATTGTTATGGCAAACGGACCGGAGTACGAGGTTCTTACTGGCCGGAGAGACGGCAGGGTATCGGATGTCTCGCTGGCGGATTCGCTGCCGGATGTGAGTGATTCAATTCAGGTTTTGAAGAACAAATTCGGTCAGAAAGGGATGACAGACAAGGACTTGGTTTTACTCAGTGCGGCACACACTATTGGAACCACGGCATGCTTCTTCATGACAAGGCGCCTCTACAACTTCTTCCCGGGTGGCGGATCAGACCCCAAAATAAATCCGATGTTGTTGCCGGAGCTAAAGTCGCAATGCCCTCGAAATGGCAACGTCAACACCCGCCTCGGCATGGACCGTGGAAGCTCCAGCACGTTCGACATTCACATTCTTCAAAACATTAGAAATGGCTTCGCCGTCCTCGCCTCCGATGCTCGCCTAAACGACGACCCATCAACCCGAGCTGTTATGGACTCCTACTTCAGCCCTCTCGCCCCCATTCTCGGTCCCTCATTTCAGGACGATTTCGTCAACTCGATAGTGAGAATGGGCGAGATCGGGACCAAAACTGGGTCTGAAGGAGAGATTCGAAGGGTATGTTCTGCTTTTAACTCAAGGTAA 984 50.81 MAKFMNFLYLFMFFGCFAPFSQAQLQFGFYARSCPSAESIVRSVVNDAVRNDGNMAAVLLRLHFHDCFVEGCDGSILIDTAPNPEKGAFGHQGVGGFEVIERAKEELESQCPGVVSCADIVAMAARDAIVMANGPEYEVLTGRRDGRVSDVSLADSLPDVSDSIQVLKNKFGQKGMTDKDLVLLSAAHTIGTTACFFMTRRLYNFFPGGGSDPKINPMLLPELKSQCPRNGNVNTRLGMDRGSSSTFDIHILQNIRNGFAVLASDARLNDDPSTRAVMDSYFSPLAPILGPSFQDDFVNSIVRMGEIGTKTGSEGEIRRVCSAFNSR 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2006785 2010545 - CmaCh19G002770.1 Cma19g00277 314965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00277 327 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Cma19g00277 327 PANTHER PEROXIDASE 13 323 - -
Cma19g00277 327 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 Gene3D Peroxidase, domain 2 158 304 - -
Cma19g00277 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cma19g00277 327 SUPERFAMILY Heme-dependent peroxidases 24 325 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 CDD secretory_peroxidase 24 324 IPR033905 GO:0004601|GO:0042744
Cma19g00277 327 Gene3D - 28 325 - -
Cma19g00277 327 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 Pfam Peroxidase 41 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Cma19g00277 327 ProSiteProfiles Plant heme peroxidase family profile. 24 325 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g00277 327 PANTHER PEROXIDASE 25-RELATED 13 323 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00263 Cma-Chr19:1876371 Cma19g00277 Cma-Chr19:2006785 1.72E-90 dispersed
Cma19g00264 Cma-Chr19:1878536 Cma19g00277 Cma-Chr19:2006785 1.85E-96 dispersed
Cma19g00277 Cma-Chr19:2006785 Cma11g01837 Cma-Chr11:12261525 1.82E-76 dispersed
Cma19g00277 Cma-Chr19:2006785 Cma20g00633 Cma-Chr20:2948709 3.28E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00277 K00430 - csv:101221831 525.013