Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00282 ATGGCAGACGGTGAAGATATCCAACCACTTGTCTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCGGGCGATGATGCCCCGAGGGCTGTGTTTCCGAGTATTGTCGGGCGACCACGTCACACCGGTGTGATGGTTGGAATGGGCCAGAAGGATGCCTATGTTGGGGATGAAGCTCAATCCAAAAGGGGTATTCTTACATTGAAATACCCAATTGAGCATGGCATTGTAAGCAACTGGGATGACATGGAGAAGATTTGGCATCACACGTTCTACAATGAGCTTCGTGTTGCTCCGGAAGAGCATCCGATACTTCTTACCGAAGCACCACTCAACCCGAAGGCAAACAGGGAGAAGATGACGCAGATCATGTTCGAAACCTTCGACGTTCCTGCTATGTATGTTGCTATCCAGGCCGTTTTATCTCTCTATGCTAGCGGTCGAACAACAGGTATTGTGTTGGATTCTGGTGATGGAGTGAGCCACACGGTGCCAATATACGAGGGGTTTTCGCTCCCTCATGCAATCCTACGTCTCGACCTTGCTGGTCGTGATTTAACGGATGCATTGATGAAAATCCTTACCGAAAGAGGTTACATGTTCACGACAACAGCCGAGCGGGAAATTGTCCGTGACGTGAAGGAGAAGCTTGCATATGTGGCTCTTGATTACGAACAAGAACTTGAGACAGCCAGGACTAGTTCAGCCATCGAAAAAAGCTATGAACTACCAGACGGGCAGGTGATTACAATAGGAGCCGAGAGATTCCGTTGCCCGGAAGTACTTTTCCAGCCATCGCTGATCGGCATGGAATCACCCGGTATCCACGAAACCACATACAACTCTATCATGAAGTGTGATGTTGATATCAGGAAAGACTTGTACGGTAACATCGTACTCAGTGGCGGTACGACAATGTTCCCCGGCATTGCCGATCGTATGAGCAAAGAAATCACCGCTCTCGCTCCAAGCAGCATGAAGATTAAGGTCGTTGCACCTCCAGAAAGAAAGTACAGTGTTTGGATTGGAGGATCCATCTTAGCATCCCTCAGTACCTTCCAACAGATGTGGATAACGAAGGCTGAATACGACGAGTCGGGTCCAGCTATAGTTCACAGGAAATGCTTCTGA 1134 48.59 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFDVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGFSLPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDVKEKLAYVALDYEQELETARTSSAIEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMESPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKAEYDESGPAIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2115699 2120756 - CmaCh19G002820.1 Cma19g00282 314970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00282 377 PANTHER ACTIN-2-LIKE 1 376 - -
Cma19g00282 377 PANTHER ACTIN 1 376 IPR004000 -
Cma19g00282 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cma19g00282 377 Gene3D - 10 371 - -
Cma19g00282 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cma19g00282 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cma19g00282 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cma19g00282 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cma19g00282 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cma19g00282 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cma19g00282 377 Gene3D - 140 340 - -
Cma19g00282 377 SMART actin_3 7 377 IPR004000 -
Cma19g00282 377 Pfam Actin 5 377 IPR004000 -
Cma19g00282 377 PRINTS Actin signature 28 37 IPR004000 -
Cma19g00282 377 PRINTS Actin signature 51 62 IPR004000 -
Cma19g00282 377 PRINTS Actin signature 63 85 IPR004000 -
Cma19g00282 377 PRINTS Actin signature 117 130 IPR004000 -
Cma19g00282 377 PRINTS Actin signature 142 161 IPR004000 -
Cma19g00282 377 PRINTS Actin signature 238 254 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01280 Cma-Chr5:9776841 Cma19g00282 Cma-Chr19:2115699 6.17E-52 dispersed
Cma10g00243 Cma-Chr10:1077552 Cma19g00282 Cma-Chr19:2115699 2.21E-88 dispersed
Cma19g00282 Cma-Chr19:2115699 Cma02g00615 Cma-Chr2:3705529 0 dispersed
Cma11g01622 Cma-Chr11:10676826 Cma19g00282 Cma-Chr19:2115699 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00282 K10355 - csv:101214459 755.362