Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma19g00286 | ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGCGGGCGGTGTGGGCGGTGTGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCAGGAACACCCGCTATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAACACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTTGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACCCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATCGCAGCTGCAATTTCGAGGATCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCACGGAATCACAAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGAAAGCAATTGGATCAAGCGAACGTGTACGGTGCCACTGCTCAACAGCAACGACCACCTATGCCTTTCATGCCATGGCCGCACACTCAACCTCGGCAGCAGCAGCAGCAGCAGCAGCAATGA | 762 | 49.08 | MDQSERSQHQQQSQQPAGGAGGVGGVGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRIDVFDFLVDIIPRDELKEEGHGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQQRPPMPFMPWPHTQPRQQQQQQQQ | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 2160452 | 2161213 | - | CmaCh19G002860.1 | Cma19g00286 | 314974 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma19g00286 | 253 | Gene3D | Histone, subunit A | 57 | 171 | IPR009072 | GO:0046982 | |
Cma19g00286 | 253 | Pfam | Core histone H2A/H2B/H3/H4 | 67 | 156 | IPR007125 | GO:0003677 | |
Cma19g00286 | 253 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 42 | 250 | - | - | |
Cma19g00286 | 253 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 42 | 250 | - | - | |
Cma19g00286 | 253 | MobiDBLite | consensus disorder prediction | 226 | 253 | - | - | |
Cma19g00286 | 253 | SUPERFAMILY | Histone-fold | 63 | 165 | IPR009072 | GO:0046982 | |
Cma19g00286 | 253 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cma19g00286 | 253 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g01302 | Cma-Chr4:6625659 | Cma19g00286 | Cma-Chr19:2160452 | 3.80E-13 | dispersed | |
Cma11g01124 | Cma-Chr11:6367027 | Cma19g00286 | Cma-Chr19:2160452 | 2.81E-78 | dispersed | |
Cma19g00286 | Cma-Chr19:2160452 | Cma20g00136 | Cma-Chr20:655561 | 1.63E-10 | dispersed | |
Cma11g01619 | Cma-Chr11:10651697 | Cma19g00286 | Cma-Chr19:2160452 | 2.98E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36881 | PF00125 | Histone | 9.40E-18 | CL0012 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma19g00286 | K08066 | - | csv:101213813 | 376.711 |