Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00286 ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGCGGGCGGTGTGGGCGGTGTGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCAGGAACACCCGCTATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAACACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTTGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACCCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATCGCAGCTGCAATTTCGAGGATCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCACGGAATCACAAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGAAAGCAATTGGATCAAGCGAACGTGTACGGTGCCACTGCTCAACAGCAACGACCACCTATGCCTTTCATGCCATGGCCGCACACTCAACCTCGGCAGCAGCAGCAGCAGCAGCAGCAATGA 762 49.08 MDQSERSQHQQQSQQPAGGAGGVGGVGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRIDVFDFLVDIIPRDELKEEGHGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQQRPPMPFMPWPHTQPRQQQQQQQQ 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2160452 2161213 - CmaCh19G002860.1 Cma19g00286 314974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00286 253 Gene3D Histone, subunit A 57 171 IPR009072 GO:0046982
Cma19g00286 253 Pfam Core histone H2A/H2B/H3/H4 67 156 IPR007125 GO:0003677
Cma19g00286 253 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 42 250 - -
Cma19g00286 253 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 42 250 - -
Cma19g00286 253 MobiDBLite consensus disorder prediction 226 253 - -
Cma19g00286 253 SUPERFAMILY Histone-fold 63 165 IPR009072 GO:0046982
Cma19g00286 253 MobiDBLite consensus disorder prediction 1 18 - -
Cma19g00286 253 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00286 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101213813 376.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01302 Cma-Chr4:6625659 Cma19g00286 Cma-Chr19:2160452 3.80E-13 dispersed
Cma11g01124 Cma-Chr11:6367027 Cma19g00286 Cma-Chr19:2160452 2.81E-78 dispersed
Cma19g00286 Cma-Chr19:2160452 Cma20g00136 Cma-Chr20:655561 1.63E-10 dispersed
Cma11g01619 Cma-Chr11:10651697 Cma19g00286 Cma-Chr19:2160452 2.98E-132 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00058 . 96 280 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 6.0e-88 321.2
Cma11g00030 . 39 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 88.5 3.9e-87 318.5
Cma11g01124 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.7 8.2e-53 204.5
Cma10g01076 . 76 243 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.7 1.4e-52 203.8
Cma11g01619 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.1 7.0e-52 201.4
Cma19g00286 . 73 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.8 9.1e-52 201.1
Cma11g01124 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 54.8 1.6e-53 206.8
Cma10g01076 . 1 243 CCAAT-HAP5 Transcription Factor Family AT1G08970 53.1 1.9e-49 193.4
Cma11g01619 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 72.1 3.2e-49 192.6
Cma19g00286 . 33 170 CCAAT-HAP5 Transcription Factor Family AT1G08970 73.1 1.6e-48 190.3
Cma10g00058 . 96 194 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cma11g00030 . 39 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 82.8 2.9e-42 169.5
Cma11g01124 . 61 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.4 2.2e-60 229.6
Cma10g01076 . 1 243 CCAAT-HAP5 Transcription Factor Family AT1G54830 55.1 1.1e-54 210.7
Cma11g01619 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 2.5e-51 199.5
Cma10g00058 . 96 254 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 7.1e-51 198.0
Cma11g00030 . 39 197 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.1 1.2e-50 197.2
Cma19g00286 . 33 214 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.2 3.5e-50 195.7
Cma10g00058 . 96 253 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 2.5e-37 152.9
Cma11g00030 . 39 196 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.4 3.2e-37 152.5
Cma10g00058 . 96 280 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 2.9e-80 295.8
Cma11g00030 . 39 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 1.1e-79 293.9
Cma11g01124 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.2 9.1e-50 194.5
Cma11g01619 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.0e-49 193.4
Cma19g00286 . 73 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.6 1.3e-48 190.7
Cma10g01076 . 76 243 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.9 1.7e-48 190.3
Cma11g01619 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 4.7e-65 245.0
Cma19g00286 . 36 203 CCAAT-HAP5 Transcription Factor Family AT1G56170 75.7 2.0e-60 229.6
Cma11g01124 . 82 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.7 1.1e-50 197.2
Cma10g00058 . 96 219 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.5e-50 194.9
Cma11g00030 . 39 162 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 5.5e-50 194.9
Cma10g01076 . 76 207 CCAAT-HAP5 Transcription Factor Family AT1G56170 73.1 7.2e-50 194.5
Cma04g01302 . 1 284 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.7 7.6e-56 214.9
Cma05g00425 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.0 4.2e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36881 PF00125 Histone 9.40E-18 CL0012 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00286 Cma_Chr19 FPKM 17.01181 16.426527 63.149597 60.770096 10.9277 12.69164 10.931859 62.629837 69.553963 59.545139