Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00286 ATGGATCAATCAGAGCGTTCACAGCATCAGCAACAATCACAGCAGCCTGCAGGCGGTGCGGGCGGTGTGGGCGGTGTGGGCGGTGCAGGCACATATTCTAATCCTTACCAAACAGCTCCGTTGGTGGCTTCAGGAACACCCGCTATTACAGTTCCCCCAACTCAGCTTGCCTTTCAGCAGGCTCAGCACTTCCACCACCACCAGCAACAACAACACCAAATGTTTTGGGCAAACCAAATGCAAGAGATTGAACAAACAACTGACTTCAAGAACCATAGTCTCCCCCTTGCTCGAATCAAGAAGATAATGAAAGCGGATGAAGACGTTCGAATGATTTCAGCTGAAGCACCCGTTGTATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACCCTACGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAACGATATCGCAGCTGCAATTTCGAGGATCGATGTCTTCGATTTCTTGGTTGATATTATTCCTAGAGACGAACTGAAAGAGGAAGGCCACGGAATCACAAAAGCCTCTATTCCTGTAGTTGGTTCCCCAGCTGATATTCCTTATTACTATGTTCCCTCGCAGCATCCAGTTGGTGCGACGGGGATGATCATGGGAAAGCAATTGGATCAAGCGAACGTGTACGGTGCCACTGCTCAACAGCAACGACCACCTATGCCTTTCATGCCATGGCCGCACACTCAACCTCGGCAGCAGCAGCAGCAGCAGCAGCAATGA 762 49.08 MDQSERSQHQQQSQQPAGGAGGVGGVGGAGTYSNPYQTAPLVASGTPAITVPPTQLAFQQAQHFHHHQQQQHQMFWANQMQEIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRIDVFDFLVDIIPRDELKEEGHGITKASIPVVGSPADIPYYYVPSQHPVGATGMIMGKQLDQANVYGATAQQQRPPMPFMPWPHTQPRQQQQQQQQ 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2160452 2161213 - CmaCh19G002860.1 Cma19g00286 314974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00286 253 Gene3D Histone, subunit A 57 171 IPR009072 GO:0046982
Cma19g00286 253 Pfam Core histone H2A/H2B/H3/H4 67 156 IPR007125 GO:0003677
Cma19g00286 253 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 42 250 - -
Cma19g00286 253 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 42 250 - -
Cma19g00286 253 MobiDBLite consensus disorder prediction 226 253 - -
Cma19g00286 253 SUPERFAMILY Histone-fold 63 165 IPR009072 GO:0046982
Cma19g00286 253 MobiDBLite consensus disorder prediction 1 18 - -
Cma19g00286 253 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01302 Cma-Chr4:6625659 Cma19g00286 Cma-Chr19:2160452 3.80E-13 dispersed
Cma11g01124 Cma-Chr11:6367027 Cma19g00286 Cma-Chr19:2160452 2.81E-78 dispersed
Cma19g00286 Cma-Chr19:2160452 Cma20g00136 Cma-Chr20:655561 1.63E-10 dispersed
Cma11g01619 Cma-Chr11:10651697 Cma19g00286 Cma-Chr19:2160452 2.98E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36881 PF00125 Histone 9.40E-18 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00286 K08066 - csv:101213813 376.711