Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00288 ATGGAGAATATAACCGCGCAATTAAAAAGGGGAATATCGCGGCAATTCTCCACCGGCTCCTTACGCCGGAGCCTCAGTCGACAATTCTCCAGGCAGTCGTCTCTTGATCCGAGGAGGAATAATATGAGATTTAGCTTTGGGAGACAGTCTTCTTTGGACCCTATTCGGCGTTGTCCTGATGAGGAAAATGAACTTTCTGTGCCCGAGAATTTGGACTCCACGATGCAGCTTCTTTTCATGGCTTGCCGTGGCGATGTTAGAGGCGTTCAGGATTTGCTTAATGATGGTACCGATGTTAATAGCATCGATTTGGATGGTCGCACCGCTTTGCATATTGCTGCTTGTGAAGGCCATGCTGAGGTTGTTAAGCTTCTGCTTAGCCGTTGGGCTAATATTGACGCTCGTGATCGTTGGGGGAGTACGGCAGCTGCAGATGCTAAATATTATGGAAATACAGAAATTTACAACATTCTCAAAGCACGAGGAGCAAAAGTTCCGAAATCGAGGAAGACACCAATGACAGTTGCAAATCCTAGGGAAGTTCCCGAGTATGAGCTTAATCCATTGGAGCTTCAGATTCGAAGGAGTGATGGTATATCAAAGGGGACATATCAAGTTGCCAAATGGAATGGTACAAAAGTGTCTGTGAAAATTCTTGATAGAGATTGTTATTCTAACCCGGATTCTATAAACGCATTCAAACACGAGTTGACATTACTCGAAAAGGTCCGACATCCCAACGTAGTTCAGTTTGTCGGCGCTGTTACCCAGAATTTGCCAATGATGATCGTTTCCGAATACCATCCAAAGGGTGATTTAGGTTGCTATCTTCAAAAGAAAGGTCGTTTATCTCCATCAAAAGCCTTAAGATTCGCCCTCGATATCGCTAGGGGAATGAACTATCTTCACGAATGCAAACCCGATCCGATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACTACTCAAAGTTGCTGGCTTTGGCTTGATAAGATTGTCAAAATTGTCAGCTGACAAAGCAAAACTAGCTCACCCAGTGGTTATTGACCATTCAAACATGTACTTAGCACCCGAAATTTACAAAGATGAAATATTTGACAGAAGCGTTGATGCATTTTCATTCGGTCTAATTTTATACGAGATGGTTGAGGGTTTTCAGCCACTCCATCCCAGGCCTCCAGAAGAGGCTGCTAAAGCTATTTGTGCAGAAGGAATGAGACCTCCTTTTAAGATCAAATTGAAAAGTTATCCGCCTGATCTAAAGGAATTGATTGAGGAATGCTGGGATCCAGAACCTGTTATGAGGCCTACTTTCTCTGAAATTATTGTAAGGTTGGATAAAATAGTTGCCAACTGCTCAAAACATGGATGGTGGAAGGACACCTTTAAACTTCCCTGGAAATAA 1422 42.9 MENITAQLKRGISRQFSTGSLRRSLSRQFSRQSSLDPRRNNMRFSFGRQSSLDPIRRCPDEENELSVPENLDSTMQLLFMACRGDVRGVQDLLNDGTDVNSIDLDGRTALHIAACEGHAEVVKLLLSRWANIDARDRWGSTAAADAKYYGNTEIYNILKARGAKVPKSRKTPMTVANPREVPEYELNPLELQIRRSDGISKGTYQVAKWNGTKVSVKILDRDCYSNPDSINAFKHELTLLEKVRHPNVVQFVGAVTQNLPMMIVSEYHPKGDLGCYLQKKGRLSPSKALRFALDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGLLKVAGFGLIRLSKLSADKAKLAHPVVIDHSNMYLAPEIYKDEIFDRSVDAFSFGLILYEMVEGFQPLHPRPPEEAAKAICAEGMRPPFKIKLKSYPPDLKELIEECWDPEPVMRPTFSEIIVRLDKIVANCSKHGWWKDTFKLPWK 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2190850 2196561 + CmaCh19G002880.1 Cma19g00288 314976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00288 473 SUPERFAMILY Protein kinase-like (PK-like) 202 451 IPR011009 -
Cma19g00288 473 SMART serkin_6 193 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00288 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Cma19g00288 473 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 33 471 - -
Cma19g00288 473 Pfam Protein tyrosine and serine/threonine kinase 200 450 IPR001245 GO:0004672|GO:0006468
Cma19g00288 473 MobiDBLite consensus disorder prediction 27 46 - -
Cma19g00288 473 Gene3D - 38 184 IPR036770 -
Cma19g00288 473 SMART ANK_2a 73 101 IPR002110 GO:0005515
Cma19g00288 473 SMART ANK_2a 138 167 IPR002110 GO:0005515
Cma19g00288 473 SMART ANK_2a 105 134 IPR002110 GO:0005515
Cma19g00288 473 Pfam Ankyrin repeats (3 copies) 80 165 IPR002110 GO:0005515
Cma19g00288 473 ProSiteProfiles Ankyrin repeat region circular profile. 105 137 - -
Cma19g00288 473 SUPERFAMILY Ankyrin repeat 73 176 IPR036770 -
Cma19g00288 473 Gene3D Phosphorylase Kinase; domain 1 187 268 - -
Cma19g00288 473 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
Cma19g00288 473 CDD STKc_MAP3K-like 199 451 - -
Cma19g00288 473 PRINTS Tyrosine kinase catalytic domain signature 265 278 IPR001245 GO:0004672|GO:0006468
Cma19g00288 473 PRINTS Tyrosine kinase catalytic domain signature 304 322 IPR001245 GO:0004672|GO:0006468
Cma19g00288 473 PRINTS Tyrosine kinase catalytic domain signature 375 397 IPR001245 GO:0004672|GO:0006468
Cma19g00288 473 PRINTS Tyrosine kinase catalytic domain signature 422 444 IPR001245 GO:0004672|GO:0006468
Cma19g00288 473 PIRSF ILK 8 472 - -
Cma19g00288 473 ProSiteProfiles Protein kinase domain profile. 189 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00288 473 Gene3D Transferase(Phosphotransferase) domain 1 269 467 - -
Cma19g00288 473 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 33 471 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01354 Cma-Chr3:8629792 Cma19g00288 Cma-Chr19:2190850 3.29E-134 dispersed
Cma19g00288 Cma-Chr19:2190850 Cma20g00249 Cma-Chr20:1220467 4.87E-122 dispersed
Cma11g01618 Cma-Chr11:10635588 Cma19g00288 Cma-Chr19:2190850 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69329 PF07714 PK_Tyr_Ser-Thr 1.10E-48 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00288 - - csv:101213574 901.353