Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00308 ATGGCTTCCTTCCATGCAGAAGCTTCTGAGTCTAGCAATGTTGATTACACTCAACGTGCTCAGTGGCTCCGAGCCGCGGTTCTCGGAGCCAACGACGGGCTCGTCTCCGTTGCATCGCTGATGATGGGCGTCGGCGCTGTGAAGCCGGACGCCAAAGCCATGCTTATTGCTGGATTTGCGGGGATGGTAGCGGGTGCTTGTAGTATGGCGATCGGAGAGTTCGTGTCGGTTTACACGCAATATGATATACAGAAAGCTCAGCTGAAGAGAGATAGGAAGCAAAAGAATGGCATGCAGCCAAGCCACTCGGCCGAGGAGGAAGAGAAGTTACCGAATCCATTACAGGCCGCGCTTGCATCGGCGATAGCATTTACGGTCGGCGCGGTTATTCCGTTGCTGTCGGCGGTGTTTATACGAGACCATAAGGTAAGGCTCGGGGTGGTTGCAGCGGTGGCGAGCTTGACGTTGGTGGTTTTCGGAGGGGTTGGAGCCGTCCTAGGGAGGACTCCGGTGGGGAAATCGGCGGCGAGAGTGGTTGTTGGAGGGTGGATGGCAATGGGCATCACTTTTGGGCTTACAAAGCTGCTCGGGTCGAAGGGGCTGTCTGTCATGCTAGACGTTCTTGGTCTAGAACTCTCCAACTCATTTGGATATGGGGGTGGAAATGAGAGAATGTCTACAATACCTGGGTTTAATCAGATACAATTTGAAGGGTTTTGTAGGTTCATTGATCATGGCTTAACAGAAGAACTTTCTAAGTTTCCAAAAATTGAAGATACAGATCAAGAAATTGAATTTCAATTATTTGTGGAAACATATAAATTGGTAGAACCATTGATAAAAGAAAGAGATGCTGTCTATGAATCACTCACATATTCTTCTGAATTATACGTATCCGCAGGATTAATTTGGAAAGACATGCTGTCTATGAATCACTCACATATTCTTCTGAATTATACGTATCCGCAGGATTAA 975 48.0 MASFHAEASESSNVDYTQRAQWLRAAVLGANDGLVSVASLMMGVGAVKPDAKAMLIAGFAGMVAGACSMAIGEFVSVYTQYDIQKAQLKRDRKQKNGMQPSHSAEEEEKLPNPLQAALASAIAFTVGAVIPLLSAVFIRDHKVRLGVVAAVASLTLVVFGGVGAVLGRTPVGKSAARVVVGGWMAMGITFGLTKLLGSKGLSVMLDVLGLELSNSFGYGGGNERMSTIPGFNQIQFEGFCRFIDHGLTEELSKFPKIEDTDQEIEFQLFVETYKLVEPLIKERDAVYESLTYSSELYVSAGLIWKDMLSMNHSHILLNYTYPQD 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 2622933 2624592 + CmaCh19G003080.1 Cma19g00308 314996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00308 324 PANTHER VACUOLAR IRON TRANSPORTER HOMOLOG 2.1 8 198 - -
Cma19g00308 324 MobiDBLite consensus disorder prediction 89 109 - -
Cma19g00308 324 Gene3D - 223 319 - -
Cma19g00308 324 Pfam VIT family 23 96 IPR008217 GO:0005384|GO:0030026
Cma19g00308 324 Pfam VIT family 103 193 IPR008217 GO:0005384|GO:0030026
Cma19g00308 324 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 227 310 - -
Cma19g00308 324 CDD Nodulin-21 21 170 - -
Cma19g00308 324 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 8 198 IPR008217 GO:0005384|GO:0030026
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00601 Cma-Chr15:2847297 Cma19g00308 Cma-Chr19:2622933 2.03E-84 dispersed
Cma15g00893 Cma-Chr15:4578980 Cma19g00308 Cma-Chr19:2622933 2.94E-09 dispersed
Cma19g00308 Cma-Chr19:2622933 Cma04g02445 Cma-Chr4:16830843 1.69E-87 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00308 K22736 - csv:101214875 317.005