Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00324 ATGAAGCTCATCCCCTTCCTTACATGGCCGAACCTCCCCATGGCCTTCCTCTTCCTCTTCTTCTTTGCTTGTTCTTCCCCTGCTTCTTCACTCCCCCACGATGAAGGACGAGCGCTCATGTCAATCAAGGCCTCGTTTAGCAATGTAGCGAATGTGTTTCTCGACTGGGATGATGATCATAACCACGATTTCTGTTCGTGGCGTGGAGTTTTCTGCGACAATGTTACCCTATCAGTTGCTGCTCTGAACTTATCCAACTTGAATCTGGGTGGGGAGATTTCACCATCCATTGGAGATTTGAGAAATTTACAGTCAATTGATTTTCAAGGGAATAAACTGTCTGGACAAATCCCTGATGAGATTGGTAACTGTGGTTTTCTTGTTCATTTGGACTTGTCTGATAATTTGCTCTATGGAGGCATCCCCTTCACTGTTTCAAAGCTTAAGCAGCTCGAGTTCTTTGATCTTGCACGAAACCAGCTTACCGGAGAGATACCAAGATTAATCTATTGGAATGAAGTTCTGCAGTATCTTGGATTACGTGGGAACGTTCTGACTGGGTCGTTGTCGTCCGATATGTGTCAATTGACTGGCTTGTGGTACTTTGATGTAAGAGGCAACAATCTGACTGGCACGATACCGGATAGCATAGGAAACTGCACCAGTTTTGAAATTCTGGATATATCCTACAACCAAATCTCGGGGGAGATTCCATACAACATCGGATTTCTACAAGTTGCCACTTTATCATTACAGGGAAACAGGTTGAGTGGTAGGATTCCCGATGTCATTGGATTGATGCAGGCGCTTGCCGTCCTGGATCTGAGTGAGAATGAACTCGACGGGCCGATACCGCCAATACTCGGGAACTTGTCTTACACAGGAAAATTATACTTGCATGGAAACAAGCTGACCGGGCCAATTCCTCCTGAGCTGGGAAATATGTCCAAGCTTAGCTACTTGCAACTAAATGATAATCATTTGGTTGGCACAATTCCTTCTGAACTTGGGAAATTGGATCAGTTGTTTGAATTGAATCTTGCTAATAATGATCTAGAAGGGCCAATCCCTCACAACATCAGCTCTTGCACTGCATTGAATCAATTCAATGTGCATGGAAACCGTCTTAACGGATCAATCCCTCTCGGTTTCCAAGATCTGGAGAGCTTGACATATTTGAATCTTTCAGCAAACAACTTCAACGGTAGGATTCCTGTTGAGCTCGGACTCATCGTAAACCTCGATACATTGGATCTGTCTCGCAATTACTTCTCGGGTCCGGTTCCTTCTTCTATTGGTGATTTGGAGCACCTTCTGAGCCTCAATTTGAGCTATAATAGACTTGTTGGGCCAATGCCAGCAGAATTTGGGAATCTCCGAAGTATTCAGACTATTGATATGTCATTCAACAACTTCTCTGGTAGCATACCCATGGAGTTGGGTCAACTACAAGATATTATCTCATTAATTTTGAACAACAACCATTTGCAAGGGAAGATACCTGATCAGCTGACCAATTGCTTTAGTTTAGCCAATTTGAACTTGTCATACAACAACTTATCTGGTATCTTACCTCCCATGAAAAATTTCTCTCGATTTGAACAAAATAGCTTTCTCGGGAATCCGCTGCTGTGTGGAAACTGGCTGGGATCGATCTGTGGGCCTTATATGGAAAAATCTCGAGCAATGTTGTCTCGGGCAGCGGTTGTTTGTATGACGTTTGGATTCATAATGTTGTTGTTTATGGTTACAATTGCTGTGTACAAGTCGAATCCATGGAAGCAATTGATGAAGCGTTCTAGCACGACTGGGCAAGGCAAGCATTTTAAGCGACTTTACAATCACTATGCACACGATTTACGGGAGTTCGAGACCGAACTTGAAACTGTTGGTAGTATCAGACACAGAAATCTTGTTAGCCTTCATGGTTATTCATTATCTCCCTGTGGGAATCTCCTCTTCTATGACTACATGGAAAATGGTTCACTCTGGGATCTGCTTCATGAACCAGGCAAGGTTAAACTGGATTGGGACGCACGTCTGAAGATCGCGGTTGGAGCTGCACAAGGGCTTGCATATCTTCACCATGATTGTAACCCGCGAATCGTTCACCGGGACGTGAAGTCTTCGAATATTTTACTGGATGAAAATTTCGAGGCCCATCTCTCTGATTTTGGGATAGCCAAATGTATCCCAACTGGAAAAACATACACGTCTACTAGCGTGCTTGGAACGATTGGCTACATCGATCCAGAGTATGCTCGAACCTCCCGGCTTAATGAGAAGTCCGATGTTTATAGCTTCGGCATTGTTCTTCTGGAACTACTGACTGGGAAGAAGGCTGTGGATGACGAGTCCAATTTGCATCAACTGATACTATCCAAGGCTGATAACAATACTGTGATGGAAGCTGTTGATCCCGAGGTTTCGGTCACCTGCGTTGATTTAGCGCATGTTCGAAAAACGTTCCAGCTTGCTCTCCTCTGCACGAAACGCAATCCTTCTGAACGGCCAACCATGCATGAGGCTGCCCGAGTATTGATCTCCCTCCAGCCACCATCACCTACCGCGAAGCATACTTCATTCCCCACGAAAACGTTGGATTATGCACAATTCTTGATTGAAAAGGGTCAGAATCGGAACCCGAAAGGGCAGGAGGAGCAGGAGAAATCAGATGCGAGTTCTTTGGATGCTCGGTGGTTTGTTCGGTTCGGAGAAGTAAGTTCTGAACAACACGGTTTGAATCAATAA 2751 44.57 MKLIPFLTWPNLPMAFLFLFFFACSSPASSLPHDEGRALMSIKASFSNVANVFLDWDDDHNHDFCSWRGVFCDNVTLSVAALNLSNLNLGGEISPSIGDLRNLQSIDFQGNKLSGQIPDEIGNCGFLVHLDLSDNLLYGGIPFTVSKLKQLEFFDLARNQLTGEIPRLIYWNEVLQYLGLRGNVLTGSLSSDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQISGEIPYNIGFLQVATLSLQGNRLSGRIPDVIGLMQALAVLDLSENELDGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNHLVGTIPSELGKLDQLFELNLANNDLEGPIPHNISSCTALNQFNVHGNRLNGSIPLGFQDLESLTYLNLSANNFNGRIPVELGLIVNLDTLDLSRNYFSGPVPSSIGDLEHLLSLNLSYNRLVGPMPAEFGNLRSIQTIDMSFNNFSGSIPMELGQLQDIISLILNNNHLQGKIPDQLTNCFSLANLNLSYNNLSGILPPMKNFSRFEQNSFLGNPLLCGNWLGSICGPYMEKSRAMLSRAAVVCMTFGFIMLLFMVTIAVYKSNPWKQLMKRSSTTGQGKHFKRLYNHYAHDLREFETELETVGSIRHRNLVSLHGYSLSPCGNLLFYDYMENGSLWDLLHEPGKVKLDWDARLKIAVGAAQGLAYLHHDCNPRIVHRDVKSSNILLDENFEAHLSDFGIAKCIPTGKTYTSTSVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDDESNLHQLILSKADNNTVMEAVDPEVSVTCVDLAHVRKTFQLALLCTKRNPSERPTMHEAARVLISLQPPSPTAKHTSFPTKTLDYAQFLIEKGQNRNPKGQEEQEKSDASSLDARWFVRFGEVSSEQHGLNQ 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 3070943 3081758 - CmaCh19G003240.1 Cma19g00324 315012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00324 916 SUPERFAMILY L domain-like 33 306 - -
Cma19g00324 916 Gene3D Ribonuclease Inhibitor 32 189 IPR032675 -
Cma19g00324 916 SMART LRR_typ_2 483 507 IPR003591 -
Cma19g00324 916 SMART LRR_typ_2 196 220 IPR003591 -
Cma19g00324 916 SMART LRR_typ_2 435 458 IPR003591 -
Cma19g00324 916 SMART LRR_typ_2 387 411 IPR003591 -
Cma19g00324 916 SMART LRR_typ_2 315 339 IPR003591 -
Cma19g00324 916 SMART LRR_typ_2 148 172 IPR003591 -
Cma19g00324 916 SMART LRR_typ_2 100 124 IPR003591 -
Cma19g00324 916 SMART LRR_typ_2 267 291 IPR003591 -
Cma19g00324 916 Gene3D Ribonuclease Inhibitor 190 289 IPR032675 -
Cma19g00324 916 Gene3D Ribonuclease Inhibitor 290 561 IPR032675 -
Cma19g00324 916 SUPERFAMILY L domain-like 292 546 - -
Cma19g00324 916 ProSiteProfiles Protein kinase domain profile. 563 862 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00324 916 Pfam Protein kinase domain 610 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00324 916 Gene3D Phosphorylase Kinase; domain 1 587 658 - -
Cma19g00324 916 SUPERFAMILY Protein kinase-like (PK-like) 617 847 IPR011009 -
Cma19g00324 916 SMART serkin_6 597 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00324 916 Pfam Leucine rich repeat 413 472 IPR001611 GO:0005515
Cma19g00324 916 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 609 889 - -
Cma19g00324 916 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 26 603 - -
Cma19g00324 916 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 609 889 - -
Cma19g00324 916 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 26 603 - -
Cma19g00324 916 Gene3D Transferase(Phosphotransferase) domain 1 659 862 - -
Cma19g00324 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672|GO:0006468
Cma19g00324 916 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Cma19g00324 916 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01050 Cma-Chr2:6257958 Cma19g00324 Cma-Chr19:3070943 0 dispersed
Cma09g00367 Cma-Chr9:1525795 Cma19g00324 Cma-Chr19:3070943 0 dispersed
Cma19g00324 Cma-Chr19:3070943 Cma07g00607 Cma-Chr7:2629596 2.60E-154 dispersed
Cma19g00324 Cma-Chr19:3070943 Cma01g01701 Cma-Chr1:11576522 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69330 PF00069 Pkinase 1.20E-35 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00324 K20718 - csv:101213139 1580.46