Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00399 ATGGAGATCTCAGTTAAATGTCCCATTTTTGGCTGCCTCTTGCTCGTGCTCTTGCCTATGCTATGCTCCTCTCAAGACAACTTTGTATACTCTAGAGCCACTTATTATGGCAGCCCTGATTGCTATGGGACACCATCTGGGGCTTGTGGATTTGGTGACTTCGGAAGGACTGTGAATGATGGCAATGTTGCTGCCGTTTCTTATCTCTATAGGAATGGTTCTGGTTGTGGTGCATGCTACCAGGTTAGGTGCACTAATCCAACATATTGCAGTGATAGTGGAGCCTATGTAGTGGTGACTGACCATGGTGAAGGGGATTACACTGACTTTATCTTGAGCCCACGAGCCTTTGCAAAATTGGCTCATCCAAACACAGCCTTTGAATTGTTCTCTTATGGTGTGGTTGATGTACAATTCAGAAGGGTTTCATGCCAATACCCAAATTACAACACGGTCAAGTTCAAGGTTCATGAGCATAGTAGGTACCCGGACTACTTGGCGATTGTCATCATTTATGTCGGTGGCCAAAACGATATCACCGTCGTTGAATTGTGGCAGGAGGATTGCAATGAATGGAAGGGGATGAGGAGATCTCATGGAGCTGTTTGGGACATGGCAAACCCACCTAAAGGAGACATCAAATTGAGGTTTCAAGTGAGTGGAAGTGTGGGATATGGAAGGTGGGTGATGGTAACCAATGCTCTCCCAAGCTATTGGAAGGCAGGAATTGCTTATGATACTGACATTCACCTCTATTAA 759 45.45 MEISVKCPIFGCLLLVLLPMLCSSQDNFVYSRATYYGSPDCYGTPSGACGFGDFGRTVNDGNVAAVSYLYRNGSGCGACYQVRCTNPTYCSDSGAYVVVTDHGEGDYTDFILSPRAFAKLAHPNTAFELFSYGVVDVQFRRVSCQYPNYNTVKFKVHEHSRYPDYLAIVIIYVGGQNDITVVELWQEDCNEWKGMRRSHGAVWDMANPPKGDIKLRFQVSGSVGYGRWVMVTNALPSYWKAGIAYDTDIHLY 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4771494 4773711 + CmaCh19G003990.1 Cma19g00399 315087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00399 252 SUPERFAMILY Barwin-like endoglucanases 14 148 IPR036908 -
Cma19g00399 252 Gene3D - 20 144 IPR036908 -
Cma19g00399 252 Gene3D - 145 248 IPR036749 -
Cma19g00399 252 PANTHER EXPANSIN-B3 13 251 - -
Cma19g00399 252 Pfam Expansin C-terminal domain 152 236 IPR007117 -
Cma19g00399 252 PANTHER EXPANSIN-LIKE B1 13 251 - -
Cma19g00399 252 SUPERFAMILY PHL pollen allergen 151 246 IPR036749 -
Cma19g00399 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 149 IPR007112 -
Cma19g00399 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Cma19g00399 252 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cma19g00399 252 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576
Cma19g00399 252 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Cma19g00399 252 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576
Cma19g00399 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 164 247 IPR007117 -
Cma19g00399 252 Pfam Lytic transglycolase 66 139 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00399 Cma-Chr19:4771494 Cma19g00439 Cma-Chr19:5362161 2.73E-62 dispersed
Cma19g00399 Cma-Chr19:4771494 Cma02g01571 Cma-Chr2:8924208 5.11E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00399 - - csv:101215548 460.685