Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00400 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTATAAGCACTCCTCTTTGGCGTAATGGACCTCCCGACAAACCGGTGTTATGCAATGCGTGTGGATCCCGATGGAGGACGAAAGGAACACTCACAAACTATACCCCGTTGCATGCTCGGACTGTTCCTGATGAATATGAAGATCACAGGGCTTCCAGGGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTAAAACTGCTGAAACGAAAGCTACAACAAGCCGATGGATCGATTGCGTGGATGCTTCCCGATCAAGGTCAGGATTACCATAGAGTAGTGGATGAAGACACAAGCAATAGGTCGAGTTCTGGATCGGTCATATCTAATCCTGAGAGTTGTGCTCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAGTAGTGTGGGAGACGACGGTGCCTTCAAGGAAGAGGACGTGTGTGACTCGTCCAAAGCAATCCCCGGTCGAAAAACTGACTAAAGATCTATGTAGTATTTTACAAGAGCAGAGATCCTCCTATTTCTCCGAAGCTTCCGAGGATGATCTGCTTTTCGAGAGCGAAAAACCGATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGACGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATACTTGATAAATGACATCTATTCCCCTCATTCTGCAACTGTTCTTGTATGTAGTGAACAACAAGAACAATTTAAAAGGGACGAGTCTCGTCACGAATGCTTACAAGTTCTTGGAAACCACGACTCGCCCTTATGTGATGTAGATATAAATGACGTCGTAAACTTCGGAGAGTTTGCGAGACGATTAACAAATGAAGAACAACAGCAACTAATGAAGTACCTACCACAGGTTGATATCGCTGAATTTCCCGAGACTGTCAAGAGAATGTTTGATAGCCCCTATTTCAAGGAGAATTTAATGTCCTTCCAACAACTGCTTAGCGAGGGCGTTTTCGATGCCTCCTTCCTTGGAACGAAGATCGAAGACTGCAAGACTCTGAGAAGGCTTGTATTATCTAATTCATCAAAATCCAAATGGGTCGAGCTCTATCAACAACTGAAGAAATGTGAAAATGGTAGCAAAGAACCTTTTCTTTCCCGTGCCAACACGTCGGTGTCAAGTAACTACATGAATGTTGATGAGAGCTACAATCAAACTATTCCAGAGGTAAAGACTATCATGAAGAGTCCCAAAAGATTGGTGATGAAGGAAAACAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTATTTGCCTTGCCATCTGATGGAAGCTACGACATGTTCGACTGCTTGCATTTCGTTGAAGAACGTTCGGATCAAGATCTATTGTTAGAGGTACGGTCGAATAGTTCGTTCCCACAAGCCGAGCTCCTTCACCCGACCTCTCATTCTGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 1551 44.55 MGKHGPCCHCGVISTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNKEVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSVISNPESCAHFSSADASDLTGPAQSVVWETTVPSRKRTCVTRPKQSPVEKLTKDLCSILQEQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIARDEESEASSVSVDNKQYLINDIYSPHSATVLVCSEQQEQFKRDESRHECLQVLGNHDSPLCDVDINDVVNFGEFARRLTNEEQQQLMKYLPQVDIAEFPETVKRMFDSPYFKENLMSFQQLLSEGVFDASFLGTKIEDCKTLRRLVLSNSSKSKWVELYQQLKKCENGSKEPFLSRANTSVSSNYMNVDESYNQTIPEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPSDGSYDMFDCLHFVEERSDQDLLLEVRSNSSFPQAELLHPTSHSGGRQASTCSSSVHPHLVHH 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4773848 4780594 - CmaCh19G004000.1 Cma19g00400 315088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00400 516 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Cma19g00400 516 Gene3D - 272 363 IPR038108 -
Cma19g00400 516 PANTHER GATA TRANSCRIPTION FACTOR 26 1 256 - -
Cma19g00400 516 PANTHER GATA TRANSCRIPTION FACTOR 26 254 516 - -
Cma19g00400 516 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cma19g00400 516 MobiDBLite consensus disorder prediction 489 510 - -
Cma19g00400 516 Pfam Asx homology domain 263 348 IPR028020 -
Cma19g00400 516 Gene3D - 4 84 IPR013088 GO:0006355|GO:0008270
Cma19g00400 516 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cma19g00400 516 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 275 387 IPR044867 -
Cma19g00400 516 PANTHER OSJNBB0038F03.10 PROTEIN 1 256 IPR044589 -
Cma19g00400 516 PANTHER OSJNBB0038F03.10 PROTEIN 254 516 IPR044589 -
Cma19g00400 516 MobiDBLite consensus disorder prediction 489 516 - -
Cma19g00400 516 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cma19g00400 516 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 46 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00400 Cma-Chr19:4773848 Cma01g00100 Cma-Chr1:456861 1.13E-07 dispersed
Cma16g01108 Cma-Chr16:8519568 Cma19g00400 Cma-Chr19:4773848 0 wgd
Cma19g00400 Cma-Chr19:4773848 Cma02g01569 Cma-Chr2:8903251 0 wgd
Cma19g00400 Cma-Chr19:4773848 Cma06g00812 Cma-Chr6:4321699 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36884 PF13919 ASXH 5.00E-08 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00400 - - cmax:111470531 1038.1