Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00400 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTATAAGCACTCCTCTTTGGCGTAATGGACCTCCCGACAAACCGGTGTTATGCAATGCGTGTGGATCCCGATGGAGGACGAAAGGAACACTCACAAACTATACCCCGTTGCATGCTCGGACTGTTCCTGATGAATATGAAGATCACAGGGCTTCCAGGGTGAAGAGCATTTCAATAAATAAAAACAAAGAAGTAAAACTGCTGAAACGAAAGCTACAACAAGCCGATGGATCGATTGCGTGGATGCTTCCCGATCAAGGTCAGGATTACCATAGAGTAGTGGATGAAGACACAAGCAATAGGTCGAGTTCTGGATCGGTCATATCTAATCCTGAGAGTTGTGCTCATTTCAGCAGTGCAGATGCAAGTGATTTGACAGGTCCAGCTCAGTCAGTAGTGTGGGAGACGACGGTGCCTTCAAGGAAGAGGACGTGTGTGACTCGTCCAAAGCAATCCCCGGTCGAAAAACTGACTAAAGATCTATGTAGTATTTTACAAGAGCAGAGATCCTCCTATTTCTCCGAAGCTTCCGAGGATGATCTGCTTTTCGAGAGCGAAAAACCGATGGTCTCTGTTGAGATAGGCCATGGAAGCATTCTCATTAGGCATCCAAGCTCGATAGCTCGAGACGAGGAATCTGAAGCTAGCTCAGTTTCAGTTGATAACAAGCAATACTTGATAAATGACATCTATTCCCCTCATTCTGCAACTGTTCTTGTATGTAGTGAACAACAAGAACAATTTAAAAGGGACGAGTCTCGTCACGAATGCTTACAAGTTCTTGGAAACCACGACTCGCCCTTATGTGATGTAGATATAAATGACGTCGTAAACTTCGGAGAGTTTGCGAGACGATTAACAAATGAAGAACAACAGCAACTAATGAAGTACCTACCACAGGTTGATATCGCTGAATTTCCCGAGACTGTCAAGAGAATGTTTGATAGCCCCTATTTCAAGGAGAATTTAATGTCCTTCCAACAACTGCTTAGCGAGGGCGTTTTCGATGCCTCCTTCCTTGGAACGAAGATCGAAGACTGCAAGACTCTGAGAAGGCTTGTATTATCTAATTCATCAAAATCCAAATGGGTCGAGCTCTATCAACAACTGAAGAAATGTGAAAATGGTAGCAAAGAACCTTTTCTTTCCCGTGCCAACACGTCGGTGTCAAGTAACTACATGAATGTTGATGAGAGCTACAATCAAACTATTCCAGAGGTAAAGACTATCATGAAGAGTCCCAAAAGATTGGTGATGAAGGAAAACAAGGATCCTGGAGAGAATGATGGGTCTTGCTTCAGTCCTAGAAGCTTATTTGCCTTGCCATCTGATGGAAGCTACGACATGTTCGACTGCTTGCATTTCGTTGAAGAACGTTCGGATCAAGATCTATTGTTAGAGGTACGGTCGAATAGTTCGTTCCCACAAGCCGAGCTCCTTCACCCGACCTCTCATTCTGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCACATCTTGTTCATCACTAA 1551 44.55 MGKHGPCCHCGVISTPLWRNGPPDKPVLCNACGSRWRTKGTLTNYTPLHARTVPDEYEDHRASRVKSISINKNKEVKLLKRKLQQADGSIAWMLPDQGQDYHRVVDEDTSNRSSSGSVISNPESCAHFSSADASDLTGPAQSVVWETTVPSRKRTCVTRPKQSPVEKLTKDLCSILQEQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIARDEESEASSVSVDNKQYLINDIYSPHSATVLVCSEQQEQFKRDESRHECLQVLGNHDSPLCDVDINDVVNFGEFARRLTNEEQQQLMKYLPQVDIAEFPETVKRMFDSPYFKENLMSFQQLLSEGVFDASFLGTKIEDCKTLRRLVLSNSSKSKWVELYQQLKKCENGSKEPFLSRANTSVSSNYMNVDESYNQTIPEVKTIMKSPKRLVMKENKDPGENDGSCFSPRSLFALPSDGSYDMFDCLHFVEERSDQDLLLEVRSNSSFPQAELLHPTSHSGGRQASTCSSSVHPHLVHH 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 4773848 4780594 - CmaCh19G004000.1 Cma19g00400 315088

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00400 516 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Cma19g00400 516 Gene3D - 272 363 IPR038108 -
Cma19g00400 516 PANTHER GATA TRANSCRIPTION FACTOR 26 1 256 - -
Cma19g00400 516 PANTHER GATA TRANSCRIPTION FACTOR 26 254 516 - -
Cma19g00400 516 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Cma19g00400 516 MobiDBLite consensus disorder prediction 489 510 - -
Cma19g00400 516 Pfam Asx homology domain 263 348 IPR028020 -
Cma19g00400 516 Gene3D - 4 84 IPR013088 GO:0006355|GO:0008270
Cma19g00400 516 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cma19g00400 516 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 275 387 IPR044867 -
Cma19g00400 516 PANTHER OSJNBB0038F03.10 PROTEIN 1 256 IPR044589 -
Cma19g00400 516 PANTHER OSJNBB0038F03.10 PROTEIN 254 516 IPR044589 -
Cma19g00400 516 MobiDBLite consensus disorder prediction 489 516 - -
Cma19g00400 516 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cma19g00400 516 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00400 - - - cmax:111470531 1038.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00400 Cma-Chr19:4773848 Cma01g00100 Cma-Chr1:456861 1.13E-07 dispersed
Cma16g01108 Cma-Chr16:8519568 Cma19g00400 Cma-Chr19:4773848 0 wgd
Cma19g00400 Cma-Chr19:4773848 Cma02g01569 Cma-Chr2:8903251 0 wgd
Cma19g00400 Cma-Chr19:4773848 Cma06g00812 Cma-Chr6:4321699 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00584 . 76 341 C2C2-Gata Transcription Factor Family AT5G25830 55.3 2.0e-65 246.9
Cma16g00644 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 50.8 1.3e-62 237.7
Cma03g00704 CCT,ECH 99 282 C2C2-Gata Transcription Factor Family AT5G66320 50.5 1.3e-43 174.5
Cma06g00812 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 3.9e-132 469.2
Cma16g01108 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 51.4 4.3e-131 465.7
Cma19g00400 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.6 2.0e-128 456.8
Cma02g01569 . 633 1129 C2C2-Gata Transcription Factor Family AT4G17570 51.6 6.1e-125 445.3
Cma06g00812 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.8 9.8e-114 407.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36884 PF13919 ASXH 5.00E-08 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00400 Cma_Chr19 FPKM 10.601542 11.201023 6.127173 7.211313 12.488148 12.470335 13.106884 4.156157 3.812185 4.031902