Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma19g00416 | ATGGGGCTACCGGTGAAGGCTTTTCCGTTCACTGTGGTGAGTCATGTACTCGCAATCGTGGCGCTGATTCTTGTCCTCGTTTGGGCCGTTCACTTCAGAGGCGGCCTGGCTTGGGAGGCTGTCAATAAGAACCTCATCTTCAACATTCATCCTGTTCTTATGCTACTCGGGTTGATCATCATAGGAGGAGAAGCAATAATTAGTTATAAATCACTGCCATTGAGAAAAGAAGTAAAAAAGGTGATCCATTTGGTGCTACACGGCGTCGCTTTGGCATTGGGCATCGTGGGAATCTGGGCAGCATTCAAGAACCATAATGAAAGCGGGATCCCTAATCTTTACAGCTTGCATTCCTGGATTGGAATTGGCGTAATTGCCCTGTATGGTGTCCAGTGGGTGTACGGGCTCGTGACATTCTTCTACCCTGGCGGGTCGGCGGATCTCCGAAGAGCATCACTTCCATGGCACGTGGTTGTGGGTATCAGTGTATACATATTGGCGGTGGGGAACTCGGCGCTGGGGTTCTTAGAGAAGCTGACGTTTCTGGAGAGCGGGGGGGTGGACAAATACGGGAGTGAGGCGTTTCTTGTGAACTTCACTGCCATTATCACTATAGTATTTGGAGCGTCTGTGCTTTTGAGTGTTGTTTCGCAGCACTCCGTTGAACAACACGACGCTGACGCCTATACTGCTATATGA | 699 | 49.79 | MGLPVKAFPFTVVSHVLAIVALILVLVWAVHFRGGLAWEAVNKNLIFNIHPVLMLLGLIIIGGEAIISYKSLPLRKEVKKVIHLVLHGVALALGIVGIWAAFKNHNESGIPNLYSLHSWIGIGVIALYGVQWVYGLVTFFYPGGSADLRRASLPWHVVVGISVYILAVGNSALGFLEKLTFLESGGVDKYGSEAFLVNFTAIITIVFGASVLLSVVSQHSVEQHDADAYTAI | 232 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 19 | 5015093 | 5017639 | + | CmaCh19G004160.1 | Cma19g00416 | 315104 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma19g00416 | 232 | SMART | 561_7 | 49 | 175 | IPR006593 | - | |
| Cma19g00416 | 232 | Pfam | Eukaryotic cytochrome b561 | 49 | 181 | IPR006593 | - | |
| Cma19g00416 | 232 | CDD | Cyt_b561_ACYB-1_like | 42 | 183 | - | - | |
| Cma19g00416 | 232 | Gene3D | - | 3 | 225 | - | - | |
| Cma19g00416 | 232 | ProSiteProfiles | Cytochrome b561 domain profile. | 13 | 216 | IPR006593 | - | |
| Cma19g00416 | 232 | PANTHER | CYTOCHROME B561-RELATED | 1 | 232 | IPR043205 | GO:0016491 | |
| Cma19g00416 | 232 | PANTHER | TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 1 | 1 | 232 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g00038 | Cma-Chr4:212345 | Cma19g00416 | Cma-Chr19:5015093 | 4.15E-57 | dispersed | |
| Cma04g02842 | Cma-Chr4:18985478 | Cma19g00416 | Cma-Chr19:5015093 | 1.53E-67 | dispersed | |
| Cma19g00416 | Cma-Chr19:5015093 | Cma18g01050 | Cma-Chr18:8736623 | 5.89E-40 | dispersed | |
| Cma19g00416 | Cma-Chr19:5015093 | Cma15g00193 | Cma-Chr15:931475 | 1.26E-70 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma19g00416 | K08360 | - | csv:101209308 | 350.517 |