Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00456 ATGGCGACCTTCACATTTACTCCCCACATCGGCAGGCTCCCAACGCCGCCGTCCCCCTCATTTCCCACTTCTTCTTCAAAACGCAAACTCAAAGCCAATTCCGTCGCCACCACCACCAGAGCCTCCCTTCAAACTTCCCCACCGACACTCTCCGACCCCTTCGTTCTTCAACTCGCCGAAACTCTCGAAGACTCTCTCCCTTCTTCTTCATCACCCTTTCCCCTCCACAAACTCAGAGAATCTTCATCGGAATCTCTTCTTTCTACTCCATGGCCCTCTCGCAGAGACGAACCCTTCCGTTTCACCGATGTTTCTTTCATAAAACAGTCCCAAATCCACCCAATCTCGAATCCCCCGCAATCTTCTGAGCTATCAACCATCCCTTTAGAAAACCAATTCACCAATGTTGTAATTGTTGATGGTCATTTTGTCAAATCGGTTTCCAATTTGACTGAATTGCCAAATGGGGTTTACGTGGGTAGCCTGATTGATCTCCCTTCTGAAAGTATTGCGAAAAGGGTATCTGATTTTGTTGATCGGAAGTTCGTGGGGGACTTGTTTTGGGCCATTAATGGCGTTGGAGCTCCAGATTTGACGGTGGTGTATGTCCCGGCGGGGTGTAAAGTGGAGAATCCAATCCATTTGAGGTACTTTTCGATTCATGGGGGCGAGGAGGGGTCGAATGAATTGGCTATTTCGAATCCTAGAGTGTTGGTTTTGGTGGAAAATGGTGGGGAGATTGAAATCATTGAAGAGTTCTTGAGTGGGGATCAGGGTAGGTCTTATTGGGCAAATCCTGTTTTGGATGTGGTAATTGGAAGTAAAGGAAGGGTTAAACATTCTTATATTCAGAATCAGTCTTTGAATGCTGCTCATATCAAATGGACTTCTGTTCAGCAGGAATCAACCAGTGCTTACGAGCTTGTGGAGATTAGCACTGGCGGAAGATTGAGTAGACACAATATCCATATCCAGCAATTGGGACCAGAGACTACCACAGAATTATCAACACTGCACTTATCAGTTGGCAATCAAACACAAGATCTACACAGTAGCCTAGTGCTCGACCACCCCCGAGGATATTCTCGACAACTTCATAAATGTATCGTCGCCAATCCCCAAGGACAAGCTGTATTTGATGGTAACGTAAAGGTCAACAGATATGCACAGCAAACAGATGCAGGACAACTAACAAGGAGTCTTCTTCTGGAACCTCGAGCGACTGTGAACGTCAAACCGAATCTTCAAATCATTGCCGATGATGTCAAGTGTTCGCATGGAGCTGCTATAAGTGACCTGGAGGAAACCCAACTCTTCTATTTTCAGGCTCGTGGCATCGATTTGAAGACAGCAAGGAAGGCTCTGATATTTTCTTTCGGATCCGAGGTGATCGAACGCTTACCTTCCAGCTCCGTTCGCAAGAGAGTCGAGCATCATATAAAAGAATTGTTGAACCCCACACTTGAAACATCCCAACACTAA 1482 46.22 MATFTFTPHIGRLPTPPSPSFPTSSSKRKLKANSVATTTRASLQTSPPTLSDPFVLQLAETLEDSLPSSSSPFPLHKLRESSSESLLSTPWPSRRDEPFRFTDVSFIKQSQIHPISNPPQSSELSTIPLENQFTNVVIVDGHFVKSVSNLTELPNGVYVGSLIDLPSESIAKRVSDFVDRKFVGDLFWAINGVGAPDLTVVYVPAGCKVENPIHLRYFSIHGGEEGSNELAISNPRVLVLVENGGEIEIIEEFLSGDQGRSYWANPVLDVVIGSKGRVKHSYIQNQSLNAAHIKWTSVQQESTSAYELVEISTGGRLSRHNIHIQQLGPETTTELSTLHLSVGNQTQDLHSSLVLDHPRGYSRQLHKCIVANPQGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARGIDLKTARKALIFSFGSEVIERLPSSSVRKRVEHHIKELLNPTLETSQH 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5489938 5495456 - CmaCh19G004560.1 Cma19g00456 315144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00456 493 Pfam SufBD protein N-terminal region 65 215 IPR045595 -
Cma19g00456 493 TIGRFAM sufD: FeS assembly protein SufD 197 475 IPR011542 GO:0016226
Cma19g00456 493 Pfam SUF system FeS cluster assembly, SufBD 233 459 IPR000825 GO:0016226
Cma19g00456 493 MobiDBLite consensus disorder prediction 22 50 - -
Cma19g00456 493 PANTHER PROTEIN ABCI7, CHLOROPLASTIC 26 487 IPR011542 GO:0016226
Cma19g00456 493 SUPERFAMILY Stabilizer of iron transporter SufD 70 484 IPR037284 -
Cma19g00456 493 MobiDBLite consensus disorder prediction 1 50 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00456 K09015 sufD; Fe-S cluster assembly protein SufD - csv:101222108 824.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00734 Cma-Chr13:6509003 Cma19g00456 Cma-Chr19:5489938 7.32E-11 dispersed
Cma18g00251 Cma-Chr18:1333570 Cma19g00456 Cma-Chr19:5489938 1.63E-18 dispersed
Cma19g00456 Cma-Chr19:5489938 Cma02g01602 Cma-Chr2:9104230 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma19g00456 . Car19g00327 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005879 1 0 1 1 1 1 2 1 1 1 1 1 2 2 1 3 1 1 2 1 1 1 1 1 1 2 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00456 Cma_Chr19 FPKM 11.397978 12.948013 18.441235 18.967447 31.020533 27.504665 31.614553 18.714491 17.332043 18.256287