Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00465 ATGGATTCTGGAGGGATTCTCGGTTTCCAATACGGCATAGTTCAGGCTCCGCTTGGACCTGATATCTCCGGTCCTGAGCTTGTTGCGGCGGTCGCCAATGCCGGCGGACTCGGTCTTCTCAGAGCCCCCGATTGGGAATCGCCTGATTATGTACGAGAATTGATACGGAAGACCCGAGCATTAACAGATAAACCATTTGGAGTAGGTGTAATTTTAGCATTTCCCCATGAGCAAAATCTAAAGGCCATATTAGATGAGAAAGTAGCAGTTCTGCAAGTTTACTGGGGAGAATGTTCAAAGGATCTTGTGGACCAAGCTCATTCTGCTGGGGTGAAAATTATTCCACAAGTTGGGTGCATCGAAGAAGCAAGCAAAGCAGTTGATGTTGGTGTTGATGCAATAATCGTGCAAGGTCGGGAAGCGGGAGGGCATGTTATTGGTCAAGAAGGTTTGATTTCCATCTTACCAAGGGTAGTTGATATTGTTGGGAATGAAGATATACCTATAATTGCGGCTGGTGGTATTTCAGATTCTCGAGGTTATGTTGCTGCCCTGGCCCTGGGCGCTCGTGGTGTCTGCCTCGGAACTAGATTTGTCGCTACTGAAGAAAGCCATGCTCACCCTGCATACAAGAGGAAGTTGGTAGAACTGGATGCAACTGATTATACAGACATTTTTGGGCGTGCAAGATGGCCCGGCGCACCCCAGCGCGTTCTACAGACACCCTTTTACGATGATTGGAAATCGCTTCCTGCGGACGAAAACGAAAGCAATCAGCCTGTCATTGGCCGCTCAAGAATTAATGGCTTGGACATAGATGTACGGCGCTTCGCAGGAACCGTGCCAAATGCAACGACAAAAGGCGACATCGAGAGCATGGCAATGTATGCCGGGCAAGGAGTAGGACTAATCAAGGAGATACTACCAGCAGGAGAAGTGACTTTTAGCAATCTTCCTCCATTAGCATTTTTCAGAGACGAAGTGAAAAAAAGCGCCATGGACGCAATCAGACACACATGCCTGAAGCTTGAAGTACCAACCAACGCGCAACCGGACGGAAGAGTCTCCATCTTCGTTAAAGGCACTTGGTATCAGCACCGCTTCGATCTCTCCATCACCGACGGCCTCAACGCTTGGACGTGCCATGCGACGGAGGACGAGGTTCGGTTGCGCGCTGAACAATGGGACCAAGAACCGTCGGACTATGTGGGCTTGGCCGAGCGCTATTTAGGGTTTCAGCAGCCTGATTCGGTCTATGACTTTGCCGATGTTGGAAATGGGGACAAGAGGCTTTCTTGGACATTTAACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAATGTCGACAGGCATCGGATAATAAGACTACTACAGCAGGAATATTGGACTTTCTCATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAGACTCAATCATTTGAGAAGCTGAAAGTGGAGTCTGAGAAGTGTTTGGCTCAGAGCGAGAGGATTTGTGAAGAAAAGGTGGAGTTTGAAACTGCACTATATGCAAAGTTTCTAAATGTCTTGAATACAAAGAAGGCCAAACTTAGAGAGTACAGAGATCAGTTTCCAAAACAGACCACAACTAGCAGCAAACTTAAACAAGACGACGAGTACTCTGATAAAACCGAATCCTTTGACGATGATAGCGATGCAGAAAAGAACTAA 1698 47.41 MDSGGILGFQYGIVQAPLGPDISGPELVAAVANAGGLGLLRAPDWESPDYVRELIRKTRALTDKPFGVGVILAFPHEQNLKAILDEKVAVLQVYWGECSKDLVDQAHSAGVKIIPQVGCIEEASKAVDVGVDAIIVQGREAGGHVIGQEGLISILPRVVDIVGNEDIPIIAAGGISDSRGYVAALALGARGVCLGTRFVATEESHAHPAYKRKLVELDATDYTDIFGRARWPGAPQRVLQTPFYDDWKSLPADENESNQPVIGRSRINGLDIDVRRFAGTVPNATTKGDIESMAMYAGQGVGLIKEILPAGEVTFSNLPPLAFFRDEVKKSAMDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRAEQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKRLSWTFNKEGMKLEWRWKCRQASDNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5558147 5575752 - CmaCh19G004650.1 Cma19g00465 315153

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00465 565 CDD NPD_like 10 234 IPR004136 GO:0018580
Cma19g00465 565 Gene3D Aldolase class I 5 319 IPR013785 -
Cma19g00465 565 PANTHER - 5 314 - -
Cma19g00465 565 SUPERFAMILY Inosine monophosphate dehydrogenase (IMPDH) 4 314 - -
Cma19g00465 565 Pfam Nitronate monooxygenase 6 73 IPR004136 GO:0018580
Cma19g00465 565 Pfam Nitronate monooxygenase 76 313 IPR004136 GO:0018580
Cma19g00465 565 MobiDBLite consensus disorder prediction 541 565 - -
Cma19g00465 565 Gene3D - 455 548 IPR014751 -
Cma19g00465 565 PANTHER 2-NITROPROPANE DIOXYGENASE 5 314 - -
Cma19g00465 565 Gene3D - 347 447 IPR038051 -
Cma19g00465 565 SUPERFAMILY XRCC4, C-terminal oligomerization domain 454 537 - -
Cma19g00465 565 MobiDBLite consensus disorder prediction 533 565 - -
Cma19g00465 565 Pfam DNA double-strand break repair and V(D)J recombination protein XRCC4 368 559 IPR010585 GO:0003677|GO:0005634|GO:0006302|GO:0006310
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00465 - - - csv:101221123 583.948
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01655 Cma-Chr11:10896838 Cma19g00465 Cma-Chr19:5558147 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1019 . . . . . . . . . . . . . . . . Cpe15g00362 . . . . . . . . . . . . . . Cone12ag0977 . . . . . . . . . . . . . . . . . . . Cma19g00465 . Car19g00341 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005796 2 2 1 2 1 1 2 1 1 1 1 0 2 1 1 1 1 2 2 1 1 1 2 1 2 1 0 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00465 Cma_Chr19 FPKM 11.472868 12.297086 249.714447 248.459686 7.091784 6.948438 7.099141 95.898163 97.787773 91.716843