Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00466 ATGGACATCTCCTTGGCGGCAATGGACGATCCTCCAACCAGTCCCGTCAAGGCCTTGGCTACGTTTCTAATTCGCCGCCACTCCGATCAGCTTCGTTCCATTGCTCATTCCCCTGATCCTAAGCTCCATTACCCTCTATTCGTGGAATTCGCAGAGCTGATGGACGACGATCCACCTCTTGCTCGTCTTGTTTTCTCCCATCCGACCGAGTACTTGCGTATTTTTGACGATGCAGCTGTTTGGGCTCATAAGATCACTTTGGGTGATTCGAAAGGTTGTATAAATGGAATTAAGAAAGATTTCATCCATGTTCGCATTAATGTCGCCGGCTCCCCTCTGGAATGGCCTGAGACTTCTCCAAGTATTGGGTCTATCAGAGTGAAGCATCGTGGAGTGCTTCTCACACTTAAAGGGACGGTAATCAGATCTGGGGCAATTAAGATGTATGAGGGGGAGAGGTGGTACATTTGCCGGAAATGCAAGCACAAGTTCCCAGTATATCCCGAGCTGGAAACCAGAAACTCAATACAGTTACCATCATTTTGTCCCTCTCAGAGGGCAAAACCATGTGAAGGGAAAAGTTTTGAGTGCTTGGAAGGTTCTGTAGTACGCCATGATTACCAAGAGATAAAAATTCAGGAGAGTACACAAGTATTGGGTGTGGGATCCATTCCTCGTGCCATTCTAGTCATTCTCAAGGATGACCTTGTTGACCTTGTTAAAGCTGGAGACGATGTTATTATTACAGGAGTATTGAGTGCAAAGTGGTCCCCAGACATCAAAGATGTACGGTGTGACCTTGATCCAATGCTAATTGCTAATCGTGTGAGAAGAACCAATGAACTGAAGGCAGAGGTTGACATCCCTGATGACATAATTATGAACTTTAGGCAGTTCTGGTCAGATTTCAAAGACACTCCTTTAAAAGGTAGAAATGCTATTCTAAGAGGTATATGCCCTCAAGTGTTTGGACTTTTTACTGTAAAACTTGCAGTGGCTTTAACACTCATTGGAGGTGTACAACATGTGGATGTATCTGGAACCAAAGTTCGAGGAGAATCTCATCTATTGTTGGTTGGCGATCCTGGTACTGGAAAGTCACAGTTCCTGAAATTTGCTGCCAAACTGAGCAACCGGGCTGTTATTACCACTGGATTAGGAAGCACTAGCGCTGGACTAACTGTTGCTGCTGTCAAGGATGGAGGGGAATGGATGCTTGAAGCTGGGGCACTTGTACTGGCTGATGGAGGACTTTGTTGTATAGATGAAGTGGACAGCATGAGAGAACATGACAGAGCCACGATCCATGAAGCAATGGAGCAACAGACTATAAGTGTTGCAAAGGCTGGTCTTGTAACAACTCTCAGTACTAGAACGATAGTATTTGGCGCAACAAATCCTAAAGGACATTATGACCCTGATCAACCTCTCTCTGTCAATACAACACTCTCCGGACCCTTATTGAGCAGATTTGATATCGTCCTTGTGCTTTTAGATACCAAAAATCCCGAATGGGATGCAGTTGTTTCATCACATATTCTCTCTGAGTGCCAACAAGAAAAGGGAAAGCGTGATAATGATCTTTCAAGTAACTGGCCTCTTACTATGCTTCGAAGATACCTCCAATTTGTAAAAGGATACTTCAGACCGGTCCTGACCAAGGAGGCTGAACAAATTATTTCAAGCTACTATCAGCTTCAAAGAAGATCAGCAATGGATAATGCAGCCAGGACAACAGTCCGCATGCTCGAAAGTTTGATACGTTTAGCACAAGCACATGCACGGCTCATGTTTAGAAATGAGGTTACTCGGCTCGATGCCATTACAGCTATATTGTGCATCGAATCATCCATGATGACCTCAGCTTTAGTGGATAGTGTTGGGAATGCCTTGCATTCCAATTTTACCGAGAACCCAGATGAGGAATATGCAAAGCAAGAAATTTTGATCCTTGAGAAGCTCAAGTCTATGGACGAATTCCCTGACATTGGCAGATGA 1998 44.49 MDISLAAMDDPPTSPVKALATFLIRRHSDQLRSIAHSPDPKLHYPLFVEFAELMDDDPPLARLVFSHPTEYLRIFDDAAVWAHKITLGDSKGCINGIKKDFIHVRINVAGSPLEWPETSPSIGSIRVKHRGVLLTLKGTVIRSGAIKMYEGERWYICRKCKHKFPVYPELETRNSIQLPSFCPSQRAKPCEGKSFECLEGSVVRHDYQEIKIQESTQVLGVGSIPRAILVILKDDLVDLVKAGDDVIITGVLSAKWSPDIKDVRCDLDPMLIANRVRRTNELKAEVDIPDDIIMNFRQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDVSGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRAVITTGLGSTSAGLTVAAVKDGGEWMLEAGALVLADGGLCCIDEVDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILSECQQEKGKRDNDLSSNWPLTMLRRYLQFVKGYFRPVLTKEAEQIISSYYQLQRRSAMDNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMMTSALVDSVGNALHSNFTENPDEEYAKQEILILEKLKSMDEFPDIGR 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5576939 5605315 + CmaCh19G004660.1 Cma19g00466 315154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00466 665 SUPERFAMILY Nucleic acid-binding proteins 43 260 IPR012340 -
Cma19g00466 665 SMART AAA_5 352 501 IPR003593 -
Cma19g00466 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 351 366 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00466 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 409 423 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00466 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 437 450 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00466 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 460 472 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00466 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 487 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00466 665 Gene3D - 149 205 - -
Cma19g00466 665 Pfam MCM AAA-lid domain 536 617 IPR041562 -
Cma19g00466 665 SMART mcm 118 619 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma19g00466 665 Gene3D - 295 623 IPR027417 -
Cma19g00466 665 Pfam MCM OB domain 124 254 IPR033762 -
Cma19g00466 665 PANTHER DNA HELICASE MCM9 43 657 - -
Cma19g00466 665 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 43 657 IPR031327 GO:0003677|GO:0005524|GO:0032508
Cma19g00466 665 Pfam MCM P-loop domain 312 515 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00466 665 ProSiteProfiles MCM family domain profile. 310 513 IPR001208 GO:0003677|GO:0005524|GO:0032508
Cma19g00466 665 Gene3D - 124 254 IPR012340 -
Cma19g00466 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 623 IPR027417 -
Cma19g00466 665 CDD MCM9 313 617 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00466 Cma-Chr19:5576939 Cma14g01060 Cma-Chr14:5671365 1.45E-77 dispersed
Cma19g00466 Cma-Chr19:5576939 Cma06g01755 Cma-Chr6:10703085 2.97E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00466 K10738 - csv:101205171 1219.91