Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00473 ATGCCGTCAAAGGGAAAGAAGAACTCAAAGACACTCTCTAGATTATCAAACTCGAACCATTCTCAATCTCCAGTGTCACGATTGGCAATACCTCCTGCCTCCGAAGTTTGTGAAGATGATTTTCTTTCCTCTATTGAAGAAGCTTCAAGTAAATATCCTTCTTTGATAGGTAGATCTGCTTTTGTTGGAAGAGTTACTAATGCTTCAGTTCAATCCACTGGCTGTAAAGTTTGGGTTTCTGAATCTTCTATGGTTTCTTCTAGCTTCACCCAAGGGGCTATTGTCTCGGTAGCACTTAGTTCCGTGGGAGATAACAGTTCCAAAGGCTTTCCTCTTTCCTCGTTAGCAGATGAATGTGGTAGGCACTTTGAGGTTGATTTTGGAGATTCATTAGTCCGTGAAGCGGGAAATTACTTTGTTCTTGCGAGAATTTTCTCTTCTAGTAAGGAGTTAAATGATGGAGTTCAATTATCAACAAGCCTCTCGTTTACCTTGGGTTGCCCTACAATTGGTCGTGTTGTGTTTATCTTCCCATTAAAGACCCACGTATGCGATGACCCATTAAATGAAAATGGGAAATTGAAAAGCTCAGAAGTTGAATCTCTGAGAATATACAATTGTAAGGAACTGTTCCTGGAGCTAGTTTCTTCAACCAATATATCAAAAAAAGACAACTTATTCTCTTCCTCAACTATTTATTCAAGGAAGGTTCATGGTCATAGAGAAAATGGTAATTTAGCATCCCCAATCTCCATGCTGTCTACATCTTCTAAATGTGATGATGTGGTATCAAATTTACTTGCAGAAAGTCCATGCGCTCATTCACTTATTAAGGAGGCCTTAGGAGATGATAGTGTTAGAAAAACTCTACAGACAATTGCTTCCAATGAGTTGTATAAACGTTGTTTGCTGCGGGGTAATCTTGTAACTTTCCCAGTACTTTCAGATCTTTGTACATTCCATGTGAGGGGTGGTAAAGGACTGTCGGGATATGATGACTCGTATGATTCTATGCACAGTGGAAGCGATGATCATTTTCAACATTTTTCATCAAATGAATATGTGGATTATGCTTTCAGTATAGACCAGTTGACAAAAGTAATTATAAATGTTCAATCAACTACAGTCTCAGAGACAGTGCAAGAAAGAGTTTCATCAAAAGTGGATCCTCAAAATCTAAATATGAGAGCTAAAGTAAAGCCTAAAGTTTGGAAATTGGGTGGTCTTTCTAAAGAATATTCAGTTTTGAAGGACATTATAATTGCCTCATCATTAAATAACACCGTGTCAAGCCTTGGTTTACGAACCACAAAGGGTGTACTTCTTCATGGTCCTCCTGGTACGGGAAAAACTTCTTTGGCTCAATTATCTGCTCATGACGCTGGTGTCAACTTATTCTATTTGAATGGACCTGAAATTATAAGTCAATATCATGGGGAAAGTGAACAGGCCTTGCATGGTGTTTTTGAGGAGGCAAGCAAAGCTGCGCCTGCTGTGATATTAATTGATGAGTTGGATGCTATTGCGCCTGCAAGAAAAGATGGAGGTGAAGAGCTGTCTCAAAGAATTGTTGCTACTTTGCTTAATCTAATGGATGGGATCAACCGAAGTGGTGGGCCACTTGTAATTGCTTCTACCAACAGGCCTGATAGCATTGAGCCTGCACTAAGGCGGCCTGGGAGACTTGACCGGGAAATTGAAATAGGTGTGCCATCTCCCAATCAACGGTTAGATATTCTAAACACAATACTAAGTGAAATGGAGCACTCTCTTTCAGTGGTGCAAGTTCAACATCTAGCTATGGTTACACATGGATTTGTGGGTGCCGATTTGGCTGCCCTTTGCAATGAGGCTGCCTTAATCTGTATAAGGCAATATCATGAGTTTAAAGTTTCTACTGATTGCGTTAGTTCTGGTAGATCTGTTATAGCTGAGGAACAACATATGGTTACTAAGGTGGATAACGAAGCCAATGTCGATCATAGGATTTCGGAACTTGTTCTCTCAAAAGATACAGGAAGTATATCAGGCATATGCTCAAACTCAGCGCCTTTATCATTTTCTGAAGATACTCTTACATCTGAGTCTTTAGCATGTGTGTCCTCGAATGAAGTGGTTGCTGATAGTGAGGATATTTTTAACTCTTCTGAAATCAAGTGTAGATTGAAGGTTGCTTTTGAAGACTTTGAGATGGCTAGAATGAAAGTGAGGCCTAGTGCCATGCGAGAGGTCATACTTGAGGTTCCAAAGGTAAAATGGGAAGACATTGGTGGACAAGGGGAGGTTAAGGTTCAATTGATGGAAGCAGTGGAATGGCCTCAAAAACATCAGGATGCATTCAAGCGAATAGGGACTAGACCTCCAACAGGAGTGTTAATGTTTGGTCCTCCTGGATGTAGCAAAACCCTAATGGCACGTGCCGTAGCTTCTGAAGCAGGACTAAATTTCCTTGCAGTAAAGGGCCCAGAACTTTTCAGTAAATGGGTTGGTGAATCTGAGAAGGCTGTTAGATCTCTATTTGCTAAGGCAAGAGCTAATGCCCCATCAATCATTTTTTTTGATGAAATTGATGGTCTTGCTGTCATTCGTGGAAAGGAAAGTGATGGAGTTTCTGTCTCTGATAGAGTTATGAGTCAACTTCTTGTTGAATTGGATGGTTTACATCAGAGAGTTGGTGTCACTGTCATTGCCGCTACCAATCGGCCAGATAAGATTGATCCAGCCCTTCTAAGGCCAGGACGTTTTGATCGGTTGCTATATGTTGGGCCTCCAAATGAATCCGAACGAGAAGAGATATTTCGTATCCATTTGTGCAAAGTTCCTTGCAGCCCAGATGTCAGCACAAGGAAGTTGGCTTCTCTTACCCCAGGGTGTACAGGGGCTGACATATCATTAATTTGCAGAGAAGCAGCCTTATTTGCCCTTGAGGAAAACCTTGAGGCTTCAAAAATAAATATGCAGCATTTAGAAACTGCAGCTGGACATGTGAAGCCATCTGAAACAGAACCTTATCGAGAATTATCATCTAGGCCCCTCGTGAAATCTGCTGCGTTACTTTTTTCTCGGTTTCCAGCTTGGGTTCATCATACGCTTGAAGGCTTCAAATGA 3108 41.06 MPSKGKKNSKTLSRLSNSNHSQSPVSRLAIPPASEVCEDDFLSSIEEASSKYPSLIGRSAFVGRVTNASVQSTGCKVWVSESSMVSSSFTQGAIVSVALSSVGDNSSKGFPLSSLADECGRHFEVDFGDSLVREAGNYFVLARIFSSSKELNDGVQLSTSLSFTLGCPTIGRVVFIFPLKTHVCDDPLNENGKLKSSEVESLRIYNCKELFLELVSSTNISKKDNLFSSSTIYSRKVHGHRENGNLASPISMLSTSSKCDDVVSNLLAESPCAHSLIKEALGDDSVRKTLQTIASNELYKRCLLRGNLVTFPVLSDLCTFHVRGGKGLSGYDDSYDSMHSGSDDHFQHFSSNEYVDYAFSIDQLTKVIINVQSTTVSETVQERVSSKVDPQNLNMRAKVKPKVWKLGGLSKEYSVLKDIIIASSLNNTVSSLGLRTTKGVLLHGPPGTGKTSLAQLSAHDAGVNLFYLNGPEIISQYHGESEQALHGVFEEASKAAPAVILIDELDAIAPARKDGGEELSQRIVATLLNLMDGINRSGGPLVIASTNRPDSIEPALRRPGRLDREIEIGVPSPNQRLDILNTILSEMEHSLSVVQVQHLAMVTHGFVGADLAALCNEAALICIRQYHEFKVSTDCVSSGRSVIAEEQHMVTKVDNEANVDHRISELVLSKDTGSISGICSNSAPLSFSEDTLTSESLACVSSNEVVADSEDIFNSSEIKCRLKVAFEDFEMARMKVRPSAMREVILEVPKVKWEDIGGQGEVKVQLMEAVEWPQKHQDAFKRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVSDRVMSQLLVELDGLHQRVGVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESEREEIFRIHLCKVPCSPDVSTRKLASLTPGCTGADISLICREAALFALEENLEASKINMQHLETAAGHVKPSETEPYRELSSRPLVKSAALLFSRFPAWVHHTLEGFK 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5664720 5677624 + CmaCh19G004730.1 Cma19g00473 315161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00473 1035 ProSitePatterns AAA-protein family signature. 893 911 IPR003960 GO:0005524|GO:0016887
Cma19g00473 1035 Gene3D - 570 676 - -
Cma19g00473 1035 PANTHER AAA-FAMILY ATPASE 20 1010 - -
Cma19g00473 1035 CDD AAA 434 569 - -
Cma19g00473 1035 Gene3D - 924 989 - -
Cma19g00473 1035 Gene3D - 382 569 IPR027417 -
Cma19g00473 1035 PANTHER - 20 1010 - -
Cma19g00473 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 625 IPR027417 -
Cma19g00473 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 999 IPR027417 -
Cma19g00473 1035 MobiDBLite consensus disorder prediction 1 28 - -
Cma19g00473 1035 Coils Coil 972 992 - -
Cma19g00473 1035 Gene3D - 748 923 IPR027417 -
Cma19g00473 1035 SMART AAA_5 436 572 IPR003593 -
Cma19g00473 1035 SMART AAA_5 787 925 IPR003593 -
Cma19g00473 1035 Pfam AAA+ lid domain 594 628 IPR041569 -
Cma19g00473 1035 Pfam AAA+ lid domain 945 990 IPR041569 -
Cma19g00473 1035 Pfam ATPase family associated with various cellular activities (AAA) 791 922 IPR003959 GO:0005524|GO:0016887
Cma19g00473 1035 Pfam ATPase family associated with various cellular activities (AAA) 440 569 IPR003959 GO:0005524|GO:0016887
Cma19g00473 1035 MobiDBLite consensus disorder prediction 1 29 - -
Cma19g00473 1035 CDD AAA 781 923 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00218 Cma-Chr14:939721 Cma19g00473 Cma-Chr19:5664720 1.55E-36 dispersed
Cma19g00473 Cma-Chr19:5664720 Cma03g00034 Cma-Chr3:303078 1.22E-32 dispersed
Cma19g00473 Cma-Chr19:5664720 Cma03g01216 Cma-Chr3:8075269 1.80E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00473 - - cpep:111811570 1935.23