Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00475 ATGACGAGGAAGAAAATTCAGATCAAGAAGATCGACAACATAGCAGCAAGACAAGTAGCATTTTCAAAGAGGAGAAAAGGGCTTTTCAAGAAGGCTAAAGAACTTGCAATTCTTTGTGATGCTGAAATTGGCCTTCTTGTTTTTTCTGCTTCTGGCAAGCTCTTTGACTACGCAAGTTCAAGTGTGCAGGGGCTGCTTGAGAAGCACAGCAGTGTCCATTCAGAGAACCTTCCAAATTTGAATGAACCATCAGTGGAGTTTCAGCTAGAGAGTAATATCCGAGCCAAGTTGAACGAAGAAGTCGAGAAAAAGAGGCACGAACTAAGGCAAATGAAGGGAGAGGAGCTTCAAGGATTAGGGCTTGAAGAGCTGAAGAAATTAGAGAAATCTCTTCTTGGAGGACTCAGCCGTGTTGCAGAAATGATGGATGGAAGAAATGCTGAATTGATCTGTGATATTGGAAGGAAGGTTGATTTGCTGATAGAAGAAAATCAAAGATTGAACCAACTTAAGGTGGAGAAAATGGCATACCAAACACACAACATGCAAGGCCATTCTTCTGAATCAATAGTCAATAATTCTCAAGATTATGATAGCTCTGATACATCTCTCAAATTGGGATTGTCATTTCTTGAGCATTGA 642 40.5 MTRKKIQIKKIDNIAARQVAFSKRRKGLFKKAKELAILCDAEIGLLVFSASGKLFDYASSSVQGLLEKHSSVHSENLPNLNEPSVEFQLESNIRAKLNEEVEKKRHELRQMKGEELQGLGLEELKKLEKSLLGGLSRVAEMMDGRNAELICDIGRKVDLLIEENQRLNQLKVEKMAYQTHNMQGHSSESIVNNSQDYDSSDTSLKLGLSFLEH 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5685284 5702646 - CmaCh19G004750.1 Cma19g00475 315163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00475 213 Gene3D - 15 76 IPR036879 GO:0003677|GO:0046983
Cma19g00475 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma19g00475 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma19g00475 213 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma19g00475 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 209 - -
Cma19g00475 213 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma19g00475 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma19g00475 213 Coils Coil 94 114 - -
Cma19g00475 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma19g00475 213 Pfam K-box region 95 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma19g00475 213 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Cma19g00475 213 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Cma19g00475 213 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma19g00475 213 PANTHER - 1 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00475 - - - csv:101203217 313.923
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00118 Cma-Chr7:635623 Cma19g00475 Cma-Chr19:5685284 1.86E-20 dispersed
Cma12g00198 Cma-Chr12:922037 Cma19g00475 Cma-Chr19:5685284 9.35E-48 dispersed
Cma19g00475 Cma-Chr19:5685284 Cma09g00600 Cma-Chr9:2804731 1.85E-33 dispersed
Cma16g00276 Cma-Chr16:1285453 Cma19g00475 Cma-Chr19:5685284 3.12E-58 wgd
Cma19g00475 Cma-Chr19:5685284 Cma03g00842 Cma-Chr3:6328471 1.75E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g956 . . . . . . . . Cmo19g00492 . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa07g00595 . . . . . . . . . . . . . . Cma19g00475 . Car19g00350 . . . . . . . . . Cla09g01571 Cam09g1583 Cec09g1725 Cco09g1786 . . Cre09g1620 . . Chy01g00215 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007708 1 4 0 0 0 2 1 2 2 1 1 1 1 0 1 1 2 0 0 2 1 1 1 0 1 1 0 1 3 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36888 PF01486 K-box 1.90E-08 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00475 Cma_Chr19 FPKM 0.0 0.0 0.0 0.441127 37.225262 32.870689 40.733101 1.309417 1.074571 1.315298