Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00476 ATGGAGCACAACGACGGTGGTGGGAATAGAGCGGAGGCTCTGCGGTGGCTGAGTATAGCGGAGAAGCTTCTGGCGGCGCGTGACTTCTATGGAACGAGGAGCTTCGCGATCCGGGCGAGAGAATCGGACCCCATAGTGCTGGAGGCGGCCGACAGAGTAATCGCCGTCGCGGATACGCTGCTAGCGGCGGAGGGACGGATCAATAATCAGTATGATTGGTACGGTATTTTGCAAATTTCGCAGCCGACTCACAGCATGGAGATAATTGCAACGCAGTATAGGCGACTGGCGCTTCTTCTTCACCCTGAGGCGAACAGAGTTGCGTTTGCAGATCATGCTTTCAGGCTCATCTCTGATGCTTGGTGTGTGCTTTCGAATCCCTTGAGAAAAGCCTTGTACGATAATGATTATCTGATGTACTCCAAATTTAGCCCTGGAACGACTGGGTCGAATCAAAAACCGAAGTCCCCGCCGCCGCAGCCCCAATTTCCGCAGCCTGTTAGAACTAGTCCGAGGAAGGAGACTAGGATGATGGTAGAGGAGCCTCAGCATCAAGAACCGCCACCACCAGAACGCCCGCATCCGCCACCGCTGGAACTCCTACAGCCGCCGTCGCCAGAACGACCGCAACCGCAACCGCCACCGCTACAACCACCGTCGCAGCCGCAGCCACAACTTCCTAACCGACCACAGCAGCAGGAAGATCCGCAGCAATTTGTAAGAAAAACCCCCAAAACCCCCCAAACCCCCAAATCAATGAGTGTTGAAGTAATTGTAGAGGAAGAGAGACCAAATGTCAGTGATGTCCATGAGTCAGCTCAGGAAGCTACTGAGCAGCACATTGATTCCAATCGCCCCTCACGGGAGCCAGAGTCTACCCTGCCGACTGAGTCCAGCATTCCAAGTTTCTGGACTGCATGCCCTTACTGTTACAATCTCTACGAGTATCCCAAGGTTTACGAAGATTGTGTGCTTAGATGCCAAAATTGTGGCAAGGCATTTCAAGCACTGGTTATTCCATCACCACCAGTAGCTGAAAATGCTTCCACATTCTGCTGCTGGGGGTTTTTCCCACTTGGGTTTTCTCCCAATGCTAAAGGGCCAATGGGGTCTGCACCCTGGTCGCCATTTTCAGCTATGTTTTCCTGTCCTCTGCCTGATAAGGGAGGAACAAAGCCAGGGAAAGCTAAAAACGTTAAACCCTCCAAGAAATCCACACCGAGATTTGTTTGTGAAGAGGATGATCTTTATATCCAAGCTTCAGAACCAAGTGACAGTTCTGATGAAGAATGGGGAAGGGTAAGTAAAAAGAAGAAGCCTAAGAGAAGTTTAGCTACTAGAAGTGATAATAGAACAAATTCTGAGAGCTTGCTGAAAGGGAACCAAGGGAATGTAGATGAAGGTGAGAATAGGAATGGGTTGGTGCGGTTTGGGTTGTCGAACGCCACGAAGGGCGAGTCAAGTAAGAAGGCTGTGGTAGCCGCAGGGGGGACTGGGAAGAAGCATAGATCGAAAGGGCCAAAGGAGGTAGGGAAGTTGGATTTGAATGTGGAATTCAGCAATGAGGTTGAAGAACCTGCCACAGGCGTAAGTGGAGGACATGGGGAGGATAATATTGAAGGAATTGGGTTCTTTGAGGGGCTTGATGAATTTTTGAGTAGTCTGCCAATACTTAATGCTGTGGCTGATGATAAGTATACAAATCATTTTAAGCTGCAATGCCTTTTGCCTAGTTGTTCTGTTCTTGCACTGTCATTCACTTTACTCCTGAGCTGA 1776 49.94 MEHNDGGGNRAEALRWLSIAEKLLAARDFYGTRSFAIRARESDPIVLEAADRVIAVADTLLAAEGRINNQYDWYGILQISQPTHSMEIIATQYRRLALLLHPEANRVAFADHAFRLISDAWCVLSNPLRKALYDNDYLMYSKFSPGTTGSNQKPKSPPPQPQFPQPVRTSPRKETRMMVEEPQHQEPPPPERPHPPPLELLQPPSPERPQPQPPPLQPPSQPQPQLPNRPQQQEDPQQFVRKTPKTPQTPKSMSVEVIVEEERPNVSDVHESAQEATEQHIDSNRPSREPESTLPTESSIPSFWTACPYCYNLYEYPKVYEDCVLRCQNCGKAFQALVIPSPPVAENASTFCCWGFFPLGFSPNAKGPMGSAPWSPFSAMFSCPLPDKGGTKPGKAKNVKPSKKSTPRFVCEEDDLYIQASEPSDSSDEEWGRVSKKKKPKRSLATRSDNRTNSESLLKGNQGNVDEGENRNGLVRFGLSNATKGESSKKAVVAAGGTGKKHRSKGPKEVGKLDLNVEFSNEVEEPATGVSGGHGEDNIEGIGFFEGLDEFLSSLPILNAVADDKYTNHFKLQCLLPSCSVLALSFTLLLS 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5716594 5718456 + CmaCh19G004760.1 Cma19g00476 315164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00476 591 MobiDBLite consensus disorder prediction 488 510 - -
Cma19g00476 591 SUPERFAMILY Chaperone J-domain 66 135 IPR036869 -
Cma19g00476 591 ProSiteProfiles dnaJ domain profile. 72 137 IPR001623 -
Cma19g00476 591 Gene3D DnaJ domain 68 137 IPR036869 -
Cma19g00476 591 MobiDBLite consensus disorder prediction 144 298 - -
Cma19g00476 591 MobiDBLite consensus disorder prediction 152 166 - -
Cma19g00476 591 MobiDBLite consensus disorder prediction 173 188 - -
Cma19g00476 591 CDD DnaJ 72 126 IPR001623 -
Cma19g00476 591 Pfam DnaJ domain 72 134 IPR001623 -
Cma19g00476 591 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 566 - -
Cma19g00476 591 MobiDBLite consensus disorder prediction 189 226 - -
Cma19g00476 591 MobiDBLite consensus disorder prediction 227 253 - -
Cma19g00476 591 MobiDBLite consensus disorder prediction 421 472 - -
Cma19g00476 591 PANTHER BNAANNG15130D PROTEIN 6 566 - -
Cma19g00476 591 MobiDBLite consensus disorder prediction 447 468 - -
Cma19g00476 591 MobiDBLite consensus disorder prediction 256 287 - -
Cma19g00476 591 SMART dnaj_3 71 129 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00476 - - - cpep:111811895 700.279
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01667 Cma19g00476 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00476 Cma-Chr19:5716594 Cma14g01435 Cma-Chr14:10999039 2.63E-22 dispersed
Cma11g01667 Cma-Chr11:10962449 Cma19g00476 Cma-Chr19:5716594 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g955 . . . . . . . Bma12g00378 Cmo19g00493 Cmo11g01464 . . . . . Cpe04g00370 Cpe15g00374 Bhi05g00935 . . . . . . . . . . . . . . . . . . . . Cme01g00203 . . Bda15g00491 . . . . . . . . Cma11g01667 Cma19g00476 Car11g01178 Car19g00351 . . . . . . . . . Cla09g01575 Cam09g1578 Cec09g1732 Cco09g1794 . . Cre09g1623 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008143 2 1 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00476 Cma_Chr19 FPKM 7.199324 6.549712 12.681227 11.377969 20.912632 17.377581 17.484583 21.039654 19.493242 20.085808