Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00483 ATGCCGGACTCCAATTTCCAAGACGCGATGTACGGTTCCGCCGTCGTGAACAACGGTGGCCGGGTTTTGGATAGCATTCAGAACCGAGTTGGCGATGAAGGTGACGACATTACTGTGGGGGAAGAGTCCATGGACAATCCTCAGATGCGCTTCGAAGATTCCGGGGGAATGAACCGAGTCCAGGACATTGTTCCTTCATCGTATGTTTCCGGCTCCGATTACAACCCTTTGACTGGAAACGGTGGTGCTGACCAACTTACGCTGTCGTTCCGCGGAGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGGATTCCTGCTGTTGGAAGTGTTCCCGTCAACCAACAGGGTACCAATGGCTTTCCTGTCAGGTCGGTTCAACCACAAAGAGCTGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGTTACACCGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTAATGCAGATGAAGTGGGCTCATCTTCACTTTTGTCTCAAACATTGGATCCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCGATGATGCGTCGTGGGCCTGCTGGCCCTAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCGAACTCGGGCGTTCAAGAACTCTCCGTGAAGGATACCGAACAGAGCGATGGCGAAGCTAATGAATCCGACGCTGCAGTTAGCTAA 870 49.2 MPDSNFQDAMYGSAVVNNGGRVLDSIQNRVGDEGDDITVGEESMDNPQMRFEDSGGMNRVQDIVPSSYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTNGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYTVRKEVALRMQRKKGQFISSKANADEVGSSSLLSQTLDPGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNSGVQELSVKDTEQSDGEANESDAAVS 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5772608 5777536 + CmaCh19G004830.1 Cma19g00483 315171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00483 289 ProSitePatterns GATA-type zinc finger domain. 218 245 IPR000679 GO:0006355|GO:0043565
Cma19g00483 289 Pfam GATA zinc finger 218 253 IPR000679 GO:0006355|GO:0043565
Cma19g00483 289 CDD ZnF_GATA 217 272 IPR000679 GO:0006355|GO:0043565
Cma19g00483 289 Gene3D - 214 270 IPR013088 GO:0006355|GO:0008270
Cma19g00483 289 SMART GATA_3 212 265 IPR000679 GO:0006355|GO:0043565
Cma19g00483 289 PANTHER GATA TRANSCRIPTION FACTOR 28 1 286 IPR045280 GO:0006355
Cma19g00483 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 264 - -
Cma19g00483 289 SMART tify_2 79 114 IPR010399 -
Cma19g00483 289 Pfam tify domain 83 113 IPR010399 -
Cma19g00483 289 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
Cma19g00483 289 Pfam CCT motif 146 188 IPR010402 GO:0005515
Cma19g00483 289 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Cma19g00483 289 PANTHER GATA TRANSCRIPTION FACTOR 18 1 286 - -
Cma19g00483 289 MobiDBLite consensus disorder prediction 262 289 - -
Cma19g00483 289 ProSiteProfiles GATA-type zinc finger domain profile. 217 269 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00483 - - - csv:101222542 493.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00207 Cma-Chr12:975513 Cma19g00483 Cma-Chr19:5772608 8.21E-56 dispersed
Cma17g00633 Cma-Chr17:5374354 Cma19g00483 Cma-Chr19:5772608 7.53E-68 dispersed
Cma19g00483 Cma-Chr19:5772608 Cma11g00131 Cma-Chr11:701417 1.06E-10 dispersed
Cma11g01674 Cma-Chr11:11008593 Cma19g00483 Cma-Chr19:5772608 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma05g00536 . 102 350 Tify Gene Family AT4G24470 50.5 5.7e-65 245.4
Cma12g00207 . 48 249 Tify Gene Family AT4G24470 56.4 1.7e-61 233.8
Cma11g01674 . 89 267 Tify Gene Family AT4G24470 59.1 2.8e-48 189.9
Cma19g00483 . 82 260 Tify Gene Family AT4G24470 59.8 8.3e-48 188.3
Cma17g00633 CST 1 288 Tify Gene Family AT1G51600 58.8 4.3e-86 315.5
Cma08g00850 CST 19 317 Tify Gene Family AT1G51600 57.0 9.8e-83 304.3
Cma19g00483 . 79 280 Tify Gene Family AT1G51600 59.8 9.6e-54 208.0
Cma11g01674 . 86 288 Tify Gene Family AT1G51600 57.3 4.8e-53 205.7
Cma05g00535 . 89 264 Tify Gene Family AT1G51600 59.0 8.4e-50 194.9
Cma12g00207 . 384 557 Tify Gene Family AT1G51600 56.6 1.9e-46 183.7
Cma05g00536 . 126 304 Tify Gene Family AT1G51600 56.0 4.3e-46 182.6
Cma17g00633 CST 1 230 Tify Gene Family AT3G21175 56.1 4.2e-59 225.3
Cma08g00850 CST 19 247 Tify Gene Family AT3G21175 55.0 2.1e-55 213.0
Cma17g00207 CCT 1 180 Tify Gene Family AT4G14713 52.1 2.7e-45 179.5
Cma08g01125 . 1 180 Tify Gene Family AT4G14713 51.6 3.9e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36889 PF06203 CCT 1.90E-15 CL0281 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00483 Cma_Chr19 FPKM 5.49931 5.143466 6.172865 6.350641 7.812749 8.059725 9.096595 28.587255 29.066645 31.684662