Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00483 ATGCCGGACTCCAATTTCCAAGACGCGATGTACGGTTCCGCCGTCGTGAACAACGGTGGCCGGGTTTTGGATAGCATTCAGAACCGAGTTGGCGATGAAGGTGACGACATTACTGTGGGGGAAGAGTCCATGGACAATCCTCAGATGCGCTTCGAAGATTCCGGGGGAATGAACCGAGTCCAGGACATTGTTCCTTCATCGTATGTTTCCGGCTCCGATTACAACCCTTTGACTGGAAACGGTGGTGCTGACCAACTTACGCTGTCGTTCCGCGGAGAGGTTTACGCTTTTGACTCTGTATCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGGATTCCTGCTGTTGGAAGTGTTCCCGTCAACCAACAGGGTACCAATGGCTTTCCTGTCAGGTCGGTTCAACCACAAAGAGCTGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGTTACACCGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAGTTTATATCCTCTAAAGCTAATGCAGATGAAGTGGGCTCATCTTCACTTTTGTCTCAAACATTGGATCCTGGACAAGATGATGGCTTGTTGGAAACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCGATGATGCGTCGTGGGCCTGCTGGCCCTAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGGGATCTTTCCAAGGTTTCGAACTCGGGCGTTCAAGAACTCTCCGTGAAGGATACCGAACAGAGCGATGGCGAAGCTAATGAATCCGACGCTGCAGTTAGCTAA 870 49.2 MPDSNFQDAMYGSAVVNNGGRVLDSIQNRVGDEGDDITVGEESMDNPQMRFEDSGGMNRVQDIVPSSYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGSVPVNQQGTNGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYTVRKEVALRMQRKKGQFISSKANADEVGSSSLLSQTLDPGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNSGVQELSVKDTEQSDGEANESDAAVS 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5772608 5777536 + CmaCh19G004830.1 Cma19g00483 315171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00483 289 ProSitePatterns GATA-type zinc finger domain. 218 245 IPR000679 GO:0006355|GO:0043565
Cma19g00483 289 Pfam GATA zinc finger 218 253 IPR000679 GO:0006355|GO:0043565
Cma19g00483 289 CDD ZnF_GATA 217 272 IPR000679 GO:0006355|GO:0043565
Cma19g00483 289 Gene3D - 214 270 IPR013088 GO:0006355|GO:0008270
Cma19g00483 289 SMART GATA_3 212 265 IPR000679 GO:0006355|GO:0043565
Cma19g00483 289 PANTHER GATA TRANSCRIPTION FACTOR 28 1 286 IPR045280 GO:0006355
Cma19g00483 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 264 - -
Cma19g00483 289 SMART tify_2 79 114 IPR010399 -
Cma19g00483 289 Pfam tify domain 83 113 IPR010399 -
Cma19g00483 289 ProSiteProfiles Tify domain profile. 79 114 IPR010399 -
Cma19g00483 289 Pfam CCT motif 146 188 IPR010402 GO:0005515
Cma19g00483 289 ProSiteProfiles CCT domain profile. 146 188 IPR010402 GO:0005515
Cma19g00483 289 PANTHER GATA TRANSCRIPTION FACTOR 18 1 286 - -
Cma19g00483 289 MobiDBLite consensus disorder prediction 262 289 - -
Cma19g00483 289 ProSiteProfiles GATA-type zinc finger domain profile. 217 269 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00207 Cma-Chr12:975513 Cma19g00483 Cma-Chr19:5772608 8.21E-56 dispersed
Cma17g00633 Cma-Chr17:5374354 Cma19g00483 Cma-Chr19:5772608 7.53E-68 dispersed
Cma19g00483 Cma-Chr19:5772608 Cma11g00131 Cma-Chr11:701417 1.06E-10 dispersed
Cma11g01674 Cma-Chr11:11008593 Cma19g00483 Cma-Chr19:5772608 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36889 PF06203 CCT 1.90E-15 CL0281 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00483 - - csv:101222542 493.041