Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00488 ATGGCTGCACAAAGCTCCAATTCCAAGTTTCCTCTCATATGTTCGTTCTTCCTTATCAACATTTCACTGTTCCTCTCTACACTTCCATTTGCAAGTTCTTTATCTTTCAACTTCACTTCTTTCAACCCAAGCAACACCGACATCAGCTACGAAAGAGCATTCCCGACAAACCAAGCAATCGAGCTCACTGGGGGCGACGCCAACATGAATTATGTTGGAAGAGCCATGTATTCCGAACCCTTGCATCTTTGGGATAAAGTCTCTAGAAACTTGGCGAGTTTCCAAACCAATTTCTCCTTTGTCATTGACTCAAGGCAAAAATCAACCTATGGTGATGGCCTTACCTTCTTCTTTGCCCCTGTTGGTTCTAAGTTCCAAGCTGACATCCCAAGAGGCAGTGGCTTGGGTATTGGCTACGATCCCGAGTTATCGAATGCGACAGCCACATTTTTTGCAGTTGAGTTTGATATCTACAGCAACCTTTTCGACCCACCTGAAAAGCTCGAACATGTAGGTATCGATATTAGTTCAATGAGATCTATTGCATATTCGATATGGAAATGTGATATCAAGGGAGGGAAGAAGAATCATGCTTGGATTAAATATGATTCTGTTAATCATAATTTGAGTGTTACTTTTACTGGGTTTGATCTGAATGGTAGTATTCTGTTCCAACATCTTCACCATGTTGTAGATTTGAGGTTGCATCTACCTGAACGGGTTACTTTTGGCTTTTCTGCTTCCACTGGTTATGCATATGCAACTCACACTGTATATTCGTGGTCTTTTGAGTCAACCCTCGACTTGACTCTTAATCCAAACTTCACCTCTAGTTCTAATTTGTCTCCACGTCCTGAGCCAAGTCCCGAGCCAATTCCAGAGTCTATTCCTGAGCCAAGTCCCGAGCCAATTCCAGAGTCTATTCCTGAGCCAAGGCCTAACTTGCACACAAGTCATAGTAATGGTAGCAAGGCAGGTCTAGCAGTCGGATTGGGCGTTGTTGGAGCAACTATCATAGTGGGAGGGTTAGTGTTGGTTTGGATAGTTGTTTGGAAGAAGAGAATGGCAACGAGGAAGAACATAGAGGAGGAGATAATGTTGGATGATTCTGAGTTTGAAAGGGGTAAAGGGCCTCGACGGTTTTCGTATAAGGAATTGGCTCAAGCAACGAACAATTTTAAGGAGGATAAGAAGCTTGGAAAAGGAGGATTTGGTGATGTTTATAAAGGTTTCTTAAAAAGTGACTTGAATTGCTATGTTGCTGTGAAGAGAATATCAAAAGGGTCTAAGCAAGGGATAAAGGAGTATGCATCTGAGGTCAAGATCATCAGCCAGTTGAGGCATAGAAACTTAGTTCAACTTATTGGTTGGTGTCATGAGAAAGGTAAACTTCTGTTGGTTTATGAATTCATGCCAAATGGAAGCTTAGACGCCCATCTTTTCAAAGAAAACAATTTCTTGACATGGGAATGTCGGTACAAAATCGCTCAAGGAATTGCTTCGGGTTTACTATATCTTCACGAAGAGTGGGAAAAATGTGTGGTGCATAGAGATATTAAGTCGAGCAATGTAATGTTGGATTCGAGTTTTAATGCTAAGCTCGGAGATTTCGGGTTAGCTAGGTTAGTGGACCATAACAAAGGTTCACAAACAACTCTTCTTGCTGGGACAATTGGCTATTTGGCTCCTGAATGTGTAACAACAGGAAGGGCTTCAAAGGAATCAGATGTCTACAGCTTCGGGATGGTTGCTTTGGAAATTGCTTGTGGAAGAAAACCTTTCGACCCGAACGCAGAGGACGAGAAGATTGTGATGGTGGAGTGGGTTTGGAAGCTTTATGGTTGTGGAAAGCTTCTTGAAGGAATAGACTCAAAACTGATCCAAGAAAGGTTTGGAGATGAGCAGCAGAAGGAGGAGCAGATGGAGCGTCTGATGGTGGTGGGTCTGTGGTGTGCTCATCCAGATAGCAATTGCAGACCTTCAATAAGACAAGCCATAAACGTGATGAACTTCGAAGCGCCATTGCCTCTTCTTCCATCTCAATTGCCTGTACCCACTTATGAATTTCTTCCCATTAGAAGGCCAAATGCTTCGTCTTCACCATCGCCATCAGCTACTCAAAATAGTGTTGCTTCTCATACTATTAATAGCTCCAACTTTAGTAATGTCTTTAGCAGTTCTTCCCACTAG 2190 42.6 MAAQSSNSKFPLICSFFLINISLFLSTLPFASSLSFNFTSFNPSNTDISYERAFPTNQAIELTGGDANMNYVGRAMYSEPLHLWDKVSRNLASFQTNFSFVIDSRQKSTYGDGLTFFFAPVGSKFQADIPRGSGLGIGYDPELSNATATFFAVEFDIYSNLFDPPEKLEHVGIDISSMRSIAYSIWKCDIKGGKKNHAWIKYDSVNHNLSVTFTGFDLNGSILFQHLHHVVDLRLHLPERVTFGFSASTGYAYATHTVYSWSFESTLDLTLNPNFTSSSNLSPRPEPSPEPIPESIPEPSPEPIPESIPEPRPNLHTSHSNGSKAGLAVGLGVVGATIIVGGLVLVWIVVWKKRMATRKNIEEEIMLDDSEFERGKGPRRFSYKELAQATNNFKEDKKLGKGGFGDVYKGFLKSDLNCYVAVKRISKGSKQGIKEYASEVKIISQLRHRNLVQLIGWCHEKGKLLLVYEFMPNGSLDAHLFKENNFLTWECRYKIAQGIASGLLYLHEEWEKCVVHRDIKSSNVMLDSSFNAKLGDFGLARLVDHNKGSQTTLLAGTIGYLAPECVTTGRASKESDVYSFGMVALEIACGRKPFDPNAEDEKIVMVEWVWKLYGCGKLLEGIDSKLIQERFGDEQQKEEQMERLMVVGLWCAHPDSNCRPSIRQAINVMNFEAPLPLLPSQLPVPTYEFLPIRRPNASSSPSPSATQNSVASHTINSSNFSNVFSSSSH 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5816049 5818238 + CmaCh19G004880.1 Cma19g00488 315176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00488 729 SUPERFAMILY Protein kinase-like (PK-like) 376 669 IPR011009 -
Cma19g00488 729 ProSitePatterns Protein kinases ATP-binding region signature. 399 423 IPR017441 GO:0005524
Cma19g00488 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 514 526 IPR008271 GO:0004672|GO:0006468
Cma19g00488 729 Pfam Protein kinase domain 393 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00488 729 PANTHER - 21 727 - -
Cma19g00488 729 CDD lectin_legume_LecRK_Arcelin_ConA 34 267 IPR001220 GO:0030246
Cma19g00488 729 CDD STKc_IRAK 399 664 - -
Cma19g00488 729 ProSiteProfiles Protein kinase domain profile. 393 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00488 729 Gene3D - 31 274 - -
Cma19g00488 729 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 268 IPR013320 -
Cma19g00488 729 Gene3D Phosphorylase Kinase; domain 1 378 470 - -
Cma19g00488 729 MobiDBLite consensus disorder prediction 276 321 - -
Cma19g00488 729 SMART serkin_6 393 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00488 729 MobiDBLite consensus disorder prediction 284 310 - -
Cma19g00488 729 Pfam Legume lectin domain 33 268 IPR001220 GO:0030246
Cma19g00488 729 ProSitePatterns Legume lectins alpha-chain signature. 237 246 IPR000985 -
Cma19g00488 729 Gene3D Transferase(Phosphotransferase) domain 1 471 689 - -
Cma19g00488 729 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 21 727 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00488 - - - cmos:111455560 1261.51
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00737 Cma-Chr16:3907023 Cma19g00488 Cma-Chr19:5816049 0 dispersed
Cma19g00488 Cma-Chr19:5816049 Cma16g00960 Cma-Chr16:7435658 9.55E-130 dispersed
Cma19g00488 Cma-Chr19:5816049 Cma19g00490 Cma-Chr19:5826667 7.74E-167 proximal
Cma11g01676 Cma-Chr11:11041783 Cma19g00488 Cma-Chr19:5816049 5.50E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g907 . . . . . . . . Cmo19g00505 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi03g00683 Csa07g00618 . Cme01g00183 . . . . . . . . . . . . Cma19g00488 . Car19g00365 . . . . . . . . . . . . . . . . . . Chy01g00191 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000150 2 7 3 2 2 5 6 4 4 9 8 5 7 10 9 7 6 7 5 4 9 4 4 5 5 9 3 2 3 2 158
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69332 PF00069 Pkinase 8.50E-52 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00488 Cma_Chr19 FPKM 0.124483 0.137052 0.384932 0.222348 2.2719 3.265981 3.073328 0.307635 0.179775 0.213908