Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00490 ATGGAGGTCTCTATGCTCACCTCTCCAAACCTTTTCCTCCTAATCTTCTGCTACTATAGCTGCTTGTGGAGTATAACCAACCCAGTTTCAGTTTCAGCCACCATTTCTTCTGAGAACTTAACGTTCAGCTTCGTTGGTTTCGACCCGAATGGCCACAACATTCATTACGAAGGAAATGCATACTCTTCCAACAATGTCATTCAGCTAACCATGAACCAGAGAGACATGCCTCGCAATGGAAGTGTTGGCCGTGCTACCTACAAAGATCCTCTCCATCTTTGGGAGAGTGTCCACAAGAATCTTGCAGACTTCACCACCAACTTCTCCTTCTCAATCGACTCGCAGGGAAGTCACCCTTATGGCGATGGCTTTGCCTTCTTCCTCGCCCCAAATGGCTCGAGTCTTCCGCATAACTCAGGAGGTAGGAACTTTGGTCTCTTGAATTCCAACAAGAATGATCTAGAGTACTCAACACCAACACCAACAGCCAACAACTTCGTTGCTGTTGAGTTCGATACCAAATCGAATGTATTATCGGAGGATCCGGGGGGGAATCACATCGGCATCGATGTAAACTCCGTTATATCTCAATGCACTACTTCATGGTGGTGGAGTGACATAGAAAACGGTGGGAAAGTTCAAGCAGTGATAAGTTACAATTCAACCTCCCACAATTTGACTGTTTTTCTAGTTGATGAAGGAGATTCTGAAGTTTCTCCAAGAAACTCCTCTAGCTTCTCTTTCAATATTGATTTAAGAGAGCATCTACCAGAATGGGTTACGATCGGCTTCTCGGGATCAACCGGAAATCTATTCGAGATTCATACAATTAGCTCGTGGAGTTTCAACTCTAGATTACAAGTTGAAGTGAATGTTAACACCACAACTGATCCAGCTAGCTCTCCAGTTCACTCCAATATAGGAATTTCCATGAAATGGCTCATGATAATCTTGGAAGTGGCACTTCCACTCATTCTAATCTTGGGGTTTGCTTGGTTTTGGATATGGATCATGAAGAGAACCAGTAGAAGAAGAAGCCTGAGAAAGGAACAAGAGGAAGATCTTGAGAACGAAACAGGGCCAAGGAAGATTTCATATAAAGATCTATCAGAAGCAACCAACAAATTCAGTGATGAAAATCTATTGGGAGAAGGAGGTTTCGGGAAGGTATACAGAGGATTTCTAGACAACAGGGAACTTGATGTAGCAGTGAAGAGAATCAGTCCAAACAATCTCCATCAAGGCTCAAGAGAATTTGCATCAGAAGTGAAAACAATCAGCAAATTAAGGCATAAGAACTTGGTAGAACTAATTGGATGGTGCTGCAGCAGAAACGAAGAATATCTCATAGTCTATAAATTCATGCCAAACAAGAGCTTAGATTTCCATCTATTTCAGCAAAACAATCTCCTAACATGGAATCACAGATACAGAATCACAGTAGGTTTAGCCTCGGCACTACACTATCTACAAGAAGAACAAGATCCATACGTTCTACACAGAGATATAAAATCAAGCAATATCTTACTAGATGCCGAATTCAACGCGAAACTCGGCGATTTCGGGCTTGCTAAACTCGTAGACCGTGGAAAACCATCAACATCCACCACGCTACGAGGAACAGAAGGTTATGTAGCACCAGAGTACCTGCAAAGCAGCATTTCAAGTAAAGAATCCGACATCTACAGTTTCGGCATCGTGTGTTTGGAAATCGCCTGCGGAAAACGAGCCCTAGGTGAAACGAGAGAAGACGGAAGGAAATGTTTGATAAAGCTAGTTGAATGGGTGTGGGATTATTACCGACGAAGGAGTGTGATTGAGGCCGCGGATCCGAAATTGCGCCAAATTTTCAAAAGAGATGAGATGAAGCAACTGTTGATCGTCGGACTTGCTTGCGCTCAACCGGATTTCTGTCTGCGGCCTTCGATCAAACAGGTGATCGACATGCTTAACTTCAAATCTCCATTGCCGAATCTTCCACTGGAATATCCCGGATTCTCGACATCTGCGGTGTTTTTGAGTGCGCAAATGGAATCATTATGTTCTTCGGCGTGTTCAGAGAACGGTAATCTCCATGGCAATAGCATATCTTCCAAGATTTCCACAGCTTCTTCCACATTTTCGAACTTGGGTTTATTTCGATCTCAACTATGA 2154 43.22 MEVSMLTSPNLFLLIFCYYSCLWSITNPVSVSATISSENLTFSFVGFDPNGHNIHYEGNAYSSNNVIQLTMNQRDMPRNGSVGRATYKDPLHLWESVHKNLADFTTNFSFSIDSQGSHPYGDGFAFFLAPNGSSLPHNSGGRNFGLLNSNKNDLEYSTPTPTANNFVAVEFDTKSNVLSEDPGGNHIGIDVNSVISQCTTSWWWSDIENGGKVQAVISYNSTSHNLTVFLVDEGDSEVSPRNSSSFSFNIDLREHLPEWVTIGFSGSTGNLFEIHTISSWSFNSRLQVEVNVNTTTDPASSPVHSNIGISMKWLMIILEVALPLILILGFAWFWIWIMKRTSRRRSLRKEQEEDLENETGPRKISYKDLSEATNKFSDENLLGEGGFGKVYRGFLDNRELDVAVKRISPNNLHQGSREFASEVKTISKLRHKNLVELIGWCCSRNEEYLIVYKFMPNKSLDFHLFQQNNLLTWNHRYRITVGLASALHYLQEEQDPYVLHRDIKSSNILLDAEFNAKLGDFGLAKLVDRGKPSTSTTLRGTEGYVAPEYLQSSISSKESDIYSFGIVCLEIACGKRALGETREDGRKCLIKLVEWVWDYYRRRSVIEAADPKLRQIFKRDEMKQLLIVGLACAQPDFCLRPSIKQVIDMLNFKSPLPNLPLEYPGFSTSAVFLSAQMESLCSSACSENGNLHGNSISSKISTASSTFSNLGLFRSQL 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5826667 5828820 + CmaCh19G004900.1 Cma19g00490 315178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00490 717 Pfam Legume lectin domain 40 294 IPR001220 GO:0030246
Cma19g00490 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Cma19g00490 717 CDD STKc_IRAK 382 651 - -
Cma19g00490 717 ProSitePatterns Legume lectins alpha-chain signature. 256 265 IPR000985 -
Cma19g00490 717 SUPERFAMILY Protein kinase-like (PK-like) 356 654 IPR011009 -
Cma19g00490 717 Pfam Protein kinase domain 377 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00490 717 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IX.1-LIKE 53 668 - -
Cma19g00490 717 SUPERFAMILY Concanavalin A-like lectins/glucanases 39 286 IPR013320 -
Cma19g00490 717 ProSitePatterns Legume lectins beta-chain signature. 167 173 IPR019825 -
Cma19g00490 717 SMART serkin_6 376 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00490 717 ProSiteProfiles Protein kinase domain profile. 376 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00490 717 Gene3D Transferase(Phosphotransferase) domain 1 455 664 - -
Cma19g00490 717 CDD lectin_legume_LecRK_Arcelin_ConA 40 286 IPR001220 GO:0030246
Cma19g00490 717 PANTHER - 53 668 - -
Cma19g00490 717 ProSitePatterns Protein kinases ATP-binding region signature. 382 405 IPR017441 GO:0005524
Cma19g00490 717 Gene3D Phosphorylase Kinase; domain 1 337 454 - -
Cma19g00490 717 Gene3D - 37 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00490 - - - csv:101209022 1115.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01676 Cma19g00490 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00490 Cma-Chr19:5826667 Cma04g00857 Cma-Chr4:4387318 2.87E-160 dispersed
Cma19g00488 Cma-Chr19:5816049 Cma19g00490 Cma-Chr19:5826667 7.74E-167 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g905 . Blo03g00035 Bda06g01133 . . . . . Cmo19g00508 Cmo11g01451 . . . . . Cpe04g00360 Cpe15g00386 Bhi05g00956 . . . . . . . . . . . . . . . . . Lsi03g00681 Csa07g00619 . Cme01g00179 . . . . . . . . . . . Cma11g01676 Cma19g00490 Car11g01167 Car19g00367 . . . . . . . . . Cla09g01596 . . . . . . . . Chy01g00189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013790 0 1 0 0 0 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 2 1 0 0 1 1 0 1 0 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69333 PF00069 Pkinase 1.50E-44 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00490 Cma_Chr19 FPKM 0.039926 0.0 0.357353 0.201566 0.732306 0.61008 0.688664 0.198908 0.280949 0.20376