Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00500 ATGTTGGAGCCGATTAGTTGCTGCCAGAGCTCCCACTCCCAGATTTATAGTGCAGTTAAACAGAAGAATTCTTTCAGGGCCTACTCTCATACTGTTCATCAACTTTGTGGGTCTTCCTTCAACTTACATTATCCACACTCGAAAGTCGCCGTTCCATCATGTACCATAAATTGCTGGAGGAATGGTTATTCTTTAGTCCACAGCAGTACTGCTACGGTAACGTTCAAAGTAGTTGGACCGAATGGATACAGTTGGTTTAATCATAGGCCTAAACGGAGGGAAAGATTAAGAACGCGTGCAGCGCTTGATGTTGCAGCTGCTGTAGATGTCATCAATGATTTAGGCTTGGATACATTGACATTCCTAGCTGTGACTGTCGTAGTTGTTCCTCTATTTAGGAGAATTAAGGCTAGCCCTATACTCGGTTTCTTCTTCGCTGGGATTGTACTTAATCAACTTGGCGTGATTAGAAATATTGTAGATGTTAAAGTTTTGTCCGAATGGGGAATACTTTTCCTGCTGTTTGAGATGGGTTTGGAGCTTTCATTTGCACGTCTAAAGGCTCTTGCGCGGTTTGCTTTTGGCATGGGTTTGACACAGGTCATATTATCTACTATTGCTTTCACTGCATTTGAACTTCCTCCTAATGGGGCTATTGGTACAAGAATTTTGGTGTTCCTTTTTCACGCCAGACCCGACTTGGTTAACATCAGAAGCGTTGATGAAGCTGTTGTGATTGGTGCAGCTCTTTCTCTATCTTCTTCAGCTTTTGTTTTACAGCTTCTTGCAGAGAAAGGAGAGCTCGCGACAAGATTTGGCTCGGCAACTCTAGGGATACTTCTTCTTCAGGATATTGCTGTTGTCCCTCTCCTGGTCATACTTCCCGTCCTCGAGAGCCAGAATTTGGGCACGGAAAGTATCTGGCCGATGCTTGCACAAGAAAGTTTGAAGGCTTTAGGTGGCCTAGGTCTGCTGTCCCTTGGAGGAAAGTTGATTCTTAGGCGAGTTTTTGAGGTTGTCGCGGAAGCAAGAAGCTCAGAGGCTTTTGTGGCCCTTTGCCTGCTGACTGTTGCTGGCACTTCGCTAATCACTCAGAAATTGGGCTTTAGTGATACGCTGGGAGCATTTTTGGCTGGGGCAATATTAGCAGAAACAAACTTCCGGACACAGATTGAAGCAGATATTCGGCCATTCCGGGGCTTGCTCCTTGGGTTATTCTTCGTTACCACAGGGACCTCGATCGATATCCAGCTCCTGTTCCGAGAATGGCCAAATGTTCTTGCACTTTTGGCAGGTTTAATAGCAATCAAGACCCTTATAATAACAGCAATAGGTCCCCGTGTCGGCCTCACTACTCAAGAAAGCGTAAGAATAGGCTTTCTTCTATCTCAAGGAGGCGAGTTCGGATTTGTAGTGTTTTCTCTGGCAAACAGGCTTGGAGTGCTACCACTCGAGTTAAACAAGCTGCTCATCATTATTGTTGTCTTGTCAATGGCTTTAACTCCCTTGCTTAATGAAGCTGGACGAAAAGCATCTGAATTCATCAGTGAAAACTACAAGACAGAGGATAAAGCTGCAGATACGGTGAATTTTGACGCTACCGAACCCGTCGTCATTGTTGGATTTGGCCAAATGGGTCAGGTCCTGGCTAATTTCTTATCTACACCTTTGGTATCCGGGGCAGATCGCAATACTCCCGGATGGCCATATGTTGCATTTGACATTGATCTTTCCGTCGTGAAGACGTCTAGAAAGCTCGGTTTTCCTGTTCTCTATGGAGATGGATCACGACCAGCAGTTTTGCAATCAGCTGGAATCTCTTCTCCAAAAGCTGTCATGGTTATGTTCACAGAGAAGAAGGCGACAATCGAGGCTGTTCAAAAGCTTCGGCTTGCTTTCCCAGCTATCCCAATTTACGCCCGAGCAAAAGACGTGGTGCATCTATTAGACTTAAAGAATGCAGGTGCGACGGATGCTATTTTGGAAGACGCTGAGACTAGTTTACAACTCGGGTCGAAGCTTTTGAAAGGGCTCGGCGTCATGTCCGATCAAGTGTCTTTTCTCAGTCGGATGGTTCTAAACTCCATGGAAATACAAGCTCAAGATGCACTTGACAAATCCAATGAGCAAGAGTTGGAGATTATGAAACCGCTGCAGATACGCGTCAAGGACTCGATCGAGTCCCCGGAGAACGAACTGTCGAGGCTGAACCGGGAAGATAATACTCCGATCTTAAACGGAAAAGAGGTGGATCAAATGAAGCAAGATGAAGATCTAGATGGAAAGGGAGTCCTGTACTGTGAACTTGATACAGACAACAACCGCCAGCCACTTTGA 2337 45.53 MLEPISCCQSSHSQIYSAVKQKNSFRAYSHTVHQLCGSSFNLHYPHSKVAVPSCTINCWRNGYSLVHSSTATVTFKVVGPNGYSWFNHRPKRRERLRTRAALDVAAAVDVINDLGLDTLTFLAVTVVVVPLFRRIKASPILGFFFAGIVLNQLGVIRNIVDVKVLSEWGILFLLFEMGLELSFARLKALARFAFGMGLTQVILSTIAFTAFELPPNGAIGTRILVFLFHARPDLVNIRSVDEAVVIGAALSLSSSAFVLQLLAEKGELATRFGSATLGILLLQDIAVVPLLVILPVLESQNLGTESIWPMLAQESLKALGGLGLLSLGGKLILRRVFEVVAEARSSEAFVALCLLTVAGTSLITQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGTSIDIQLLFREWPNVLALLAGLIAIKTLIITAIGPRVGLTTQESVRIGFLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIIVVLSMALTPLLNEAGRKASEFISENYKTEDKAADTVNFDATEPVVIVGFGQMGQVLANFLSTPLVSGADRNTPGWPYVAFDIDLSVVKTSRKLGFPVLYGDGSRPAVLQSAGISSPKAVMVMFTEKKATIEAVQKLRLAFPAIPIYARAKDVVHLLDLKNAGATDAILEDAETSLQLGSKLLKGLGVMSDQVSFLSRMVLNSMEIQAQDALDKSNEQELEIMKPLQIRVKDSIESPENELSRLNREDNTPILNGKEVDQMKQDEDLDGKGVLYCELDTDNNRQPL 778
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 5897011 5907881 + CmaCh19G005000.1 Cma19g00500 315188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00500 778 MobiDBLite consensus disorder prediction 729 757 - -
Cma19g00500 778 Coils Coil 693 713 - -
Cma19g00500 778 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 84 754 - -
Cma19g00500 778 Gene3D - 536 706 - -
Cma19g00500 778 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 84 754 - -
Cma19g00500 778 Pfam Sodium/hydrogen exchanger family 121 505 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma19g00500 778 Pfam TrkA-N domain 537 660 IPR003148 GO:0006813
Cma19g00500 778 Gene3D - 113 513 IPR038770 -
Cma19g00500 778 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 536 674 IPR036291 -
Cma19g00500 778 ProSiteProfiles RCK N-terminal domain profile. 536 668 IPR003148 GO:0006813
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00500 Cma-Chr19:5897011 Cma18g01197 Cma-Chr18:9499886 2.11E-29 dispersed
Cma19g00500 Cma-Chr19:5897011 Cma11g01680 Cma-Chr11:11055183 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00500 - - csv:101209266 1288.86