Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00513 ATGTCGATTTCCTTTCTGGGTTTCGACGAATTCAAGGGAATGGAGGACAATGGCTTTGTCAATCAGTGGCAGAAGAGCTCAATAGATGAGCTTGGCGTCCCATTAGCAGCAGCTTTTGGGGAGGATTTGCAGCATTCTTATGCTCAGTCAAACATCGATCAGAAGGCTACTTTAAACTGTTCTCACAACGCCATACTCGGGTATGTGAAACAGCTCAAGAGTGATGGATGGAGTTCGTATCAAACGAATAATCATTCGTCAAACTCACCAGTCGTTTCTTATCCGACTGCGTCTGTTTCGGCTTCCAACTACACGAACCAAATGGACTTCACGAGGCCGAAAGAGGAGGTCGTGTGTCCTCGGAGTATTAGCAACCTCCCTTCTGATATGTTGGTTTCTCAGGACACATTACGCCACCCGAGCCATGGAACGAAAAGTACCTCTACAAACAGTAGAATCCCACAGGCTCAAGATCACATTCTTGCAGAGCGGAAACGTCGAGAGAAGCTTAACCAGCGGTTTATCGCTTTGTCTGCTATAGTTCCTGGCCTAAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATTAAGTACCTGAAACAGCTCCAAGAGAAAGTGAAGATACTAGAGGAACAAACCCGCAGGAAAGACATCGAATCCGTGGTATTCATCAACACATCAAATGAGGACGACGACGCACTTCCCGAGATCGAAGCAAGATTATGCGACAAAAACGTCCTTATAAGAATACACTGCGAGAAAAAGAAAGATGTCATAGAGAACACAGTTGCTGAAATTGAAAAGTTGCACCTTACAATAGTCAACAGCAGTGTAATGTCATTTGGGAGTCTTGCTCTCGACATAACCATTATCGCTCAGATGGATAACGAGTTCTGTTTGACGTTAAAGGACCTCGTGAAAAAGTTGCAGTCGACTTTGCACTCGTTCGAATGA 957 44.93 MSISFLGFDEFKGMEDNGFVNQWQKSSIDELGVPLAAAFGEDLQHSYAQSNIDQKATLNCSHNAILGYVKQLKSDGWSSYQTNNHSSNSPVVSYPTASVSASNYTNQMDFTRPKEEVVCPRSISNLPSDMLVSQDTLRHPSHGTKSTSTNSRIPQAQDHILAERKRREKLNQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVKILEEQTRRKDIESVVFINTSNEDDDALPEIEARLCDKNVLIRIHCEKKKDVIENTVAEIEKLHLTIVNSSVMSFGSLALDITIIAQMDNEFCLTLKDLVKKLQSTLHSFE 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6022892 6025550 + CmaCh19G005130.1 Cma19g00513 315201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00513 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Cma19g00513 318 PANTHER BHLH TRANSCRIPTION FACTOR 10 317 - -
Cma19g00513 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 159 217 IPR036638 GO:0046983
Cma19g00513 318 CDD bHLH_AtNAI1_like 156 228 - -
Cma19g00513 318 Coils Coil 193 220 - -
Cma19g00513 318 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Cma19g00513 318 Gene3D - 151 219 IPR036638 GO:0046983
Cma19g00513 318 SMART finulus 160 209 IPR011598 GO:0046983
Cma19g00513 318 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 10 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00605 Cma-Chr7:2619750 Cma19g00513 Cma-Chr19:6022892 3.92E-57 dispersed
Cma07g00606 Cma-Chr7:2624539 Cma19g00513 Cma-Chr19:6022892 3.08E-53 dispersed
Cma11g01684 Cma-Chr11:11101687 Cma19g00513 Cma-Chr19:6022892 5.86E-161 dispersed
Cma19g00513 Cma-Chr19:6022892 Cma06g00648 Cma-Chr6:3215044 2.07E-21 dispersed
Cma19g00513 Cma-Chr19:6022892 Cma03g00867 Cma-Chr3:6435098 1.14E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36890 PF00010 HLH 1.70E-11 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00513 - - csv:101209844 523.472