Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00514 ATGTCTAATTCACTCAACCCTCCACCACTTCCCGCCGGCAAACACTCCGGCCATCCCCCTTCTCTGGTGGGTCTCCGCCACTTCCTCCTCCTCCTCCTCCTCCTCTGTTCACTTTCTCTCTCCCATGGCGATGAACTTCAGCCACTTTTGGACCTCAAGTCCGCCCTCCACAACAACTCAACCTCCATGGTTCTTAGTTCTTGGGTAAGAGGGAAAGATGTTTGCAGCAGCTTCCATGGCATTGTCTGTGATTCCAATGGCTTTGTTGTGGAAATCAATCTCTCTGCTCATAACTTATCTGGGATTCTTCCTTTTCATTCCATTTGTTCTTTGCAGTCTCTTGAGAAGCTCTCTTTTGGGGGTAATTTTTTGTATGGGACAGTCAGTAATGCCTTGAGGAACTGTTCCATGTTGAAGTATTTGGATTTGGGACAGAATTTCTTTACTGGTGAAGTGCCTGATTTGTCTTCTTTGAGGGGATTAAGGTTCTTGAATTTGAATAACAGTGGGTTTTCTGGAGATTTTCCTTGGAAATCTCTTCTGAATCTTACTGATTTGGAGTTCTTGAGCCTTGGAGATAATTCATTTAACCCAACAAGTTCATTCCCATCAGAGATTATTGAGCTTAACAAGCTTTATTGGCTTTACCTCTCTAACTGCAGCATTCATGGAGAAATCCCACCTGGGATTGGGAACCTCTCTCTGCTTGAGAATCTTGAGCTCTCACAAAATGAACTTACAGGTGACATTCCTTCTGAGATTGTGAATCTCAAGAGGCTATGGCAGCTGGAGTTACATGAGAATTCCTTGACCGGGAAGCTTCCAATCGGGTTCGGTAACCTCACTGGACTGAGGGAATTTGATGCCTCTACTAATATTCTTGAAGGTGATCTTATGGAGTTGAGGTTCCTGACTAATCTGGAGTCCTTGCAGCTCTTTCAAAATCAATTTTCCGGTACGATTCCGGAGGAGTTCGGGGACTTCAAGGACCTTGTTGAACTATCTCTTTACCAGAACAAGCTCACTGGCAGCCTGCCTCAAAGAATTGGATCTTGGGCAGCCTTCCTTTTCATTGATGTTTCAGAGAATTTCTTATCTGGACCTATACCTCCAGACATGTGCAAGCAGGGCAATATGACTGTTCTCCTGATGCTGCAAAACAACTTCAGTGGTGGAATCCCAGAAAGCTATATGAACTGTAAATCTTTGAAGCGTTTTCGTGTAAGCAATAACTCTCTTTCGGGTGTCGTTCCTGCTGGGATTTGGAGTCTGCCGAATCTTAGCATCATTGATCTTTCAATGAATCAGTTCGACGGTCCGGTGACTTCCGATATCGGTAAAGCAAAAGCACTTGCCCAGTTATTCTTATCGAACAACCGGTTTTCTGGAAAACTACCAGCCGAGCTTGGCGAAGTATCATCCTTAGTCTCGATCCAGATCGATTTGAACCAATTTGTTGGTCCAATACCAGAATCACTTGGCAAGTTGAAGGTCTTAGACAGCCTTTCTTTGAACAACAACAAGTTTTCTGACAACATACCTAGCTCATTAGGCTCTTGCAGTTCTCTTTCTACCATAGATCTGTCTATGAATTCGTTCTCCGGGCATATTCCAGAGAATCTTGGATATCTGCCAATTCTAAACTCCTTGAATCTGTCGAACAACAAACTTTCAGGCGAAATTCCAACTAGTTTTTCTCAGCTGAAGCTAAGCAGTTTCGACCTGTCTAACAACAGGTTAAGTGGCCAAGTACCTGAATCATTAGCGATCCAAGCCTTTGAAGAAAGTTTCATGAGAAATCCAGGCTTGTGCAGTGAGTCTATTAGATACTTGAATTCATGTTCATCAACCTCTAGATCATCCAGCCACATCAGGTCGTTGCTGTCATGTACCATTGCTGGAATTCTAGTGTTGCTGCTCATGTCCTTCTTGTGCTTGTTGTTTGTTAAATCGAAACGTAACAATGCTAAGCATTTACTGAAATCCCGATCGTGGGATATGAAGCCATTCCACATAGTTTGCTTCACGGAGAAGGAAATCATTGATTCAATCAATTCTCACAACTTGATAGGCAAAGGAGGATCTGGAAATGTGTACAAAGTTGTATTAAGTAATGGAAAAGAGCTTGCCGTGAAACATATATGGCAGTCGAGCTCCATCGACCAAACAAATTGTCAAACCAGTGCAACCATCTTAACCAAAAGGAAGATCAGGTCTTCTGAATATGACGCAGAAGTAGCTACATTGAGTTCAGTGAGACATGTCAATGTAGTGAAATTATACTGTAGCATTTCGAGCGAGGATAGTAACCTGTTGGTTTATGAGTACTTACCGAATGGAAGTTTATGGGATCAGCTGCATACTAGCAGAAAGATTGAGATGGGATGGCAGATAAGGTACGAGGTTGCAGTTGGAGCAGCAAGAGGACTCGAATATTTGCATCATGGGTGTGACCGACCCGTGATTCACCGTGATGTGAAGTCGAGCAATATTTTATTAGACAGTGATTGGAAACCTAGGATAGCAGATTTCGGGTTAGCCAAGATTCTGCAAGATGCCTGTGGGGGTGGAGATTCTTCTCATGTCATAGCAGGAACACTCGGCTACATAGCCCCAGAATATGCCTACACGTGCAAGATAAACGAGAAGAGCGACGTTTACAGCTTCGGAGTGGTCCTAATGGAACTAGTAACAGGAAGGAAGCCCAATGAGCCAGAGTTTGGGGAGAACAAAGACATTGTACAATGGGCACACAGCAGAATGAGAGACCTAAAAGGCAATCTAAAAGATATGGTAGATCCTAGCATCTCAGAGGTTCAAGTGGAAGATCCAATCAAAGTGTTACGAATCGCACTTCGCTGCACGGCTAAGACTCCGTCTACAAGGCCCTCCATGAGAATGGTAGTTCATATGCTCGAAGAGGCTGAACCTTGTAACTTTATTGACATTGTTGTCAAGAAAGAATGTGCAAAGTAA 2976 43.51 MSNSLNPPPLPAGKHSGHPPSLVGLRHFLLLLLLLCSLSLSHGDELQPLLDLKSALHNNSTSMVLSSWVRGKDVCSSFHGIVCDSNGFVVEINLSAHNLSGILPFHSICSLQSLEKLSFGGNFLYGTVSNALRNCSMLKYLDLGQNFFTGEVPDLSSLRGLRFLNLNNSGFSGDFPWKSLLNLTDLEFLSLGDNSFNPTSSFPSEIIELNKLYWLYLSNCSIHGEIPPGIGNLSLLENLELSQNELTGDIPSEIVNLKRLWQLELHENSLTGKLPIGFGNLTGLREFDASTNILEGDLMELRFLTNLESLQLFQNQFSGTIPEEFGDFKDLVELSLYQNKLTGSLPQRIGSWAAFLFIDVSENFLSGPIPPDMCKQGNMTVLLMLQNNFSGGIPESYMNCKSLKRFRVSNNSLSGVVPAGIWSLPNLSIIDLSMNQFDGPVTSDIGKAKALAQLFLSNNRFSGKLPAELGEVSSLVSIQIDLNQFVGPIPESLGKLKVLDSLSLNNNKFSDNIPSSLGSCSSLSTIDLSMNSFSGHIPENLGYLPILNSLNLSNNKLSGEIPTSFSQLKLSSFDLSNNRLSGQVPESLAIQAFEESFMRNPGLCSESIRYLNSCSSTSRSSSHIRSLLSCTIAGILVLLLMSFLCLLFVKSKRNNAKHLLKSRSWDMKPFHIVCFTEKEIIDSINSHNLIGKGGSGNVYKVVLSNGKELAVKHIWQSSSIDQTNCQTSATILTKRKIRSSEYDAEVATLSSVRHVNVVKLYCSISSEDSNLLVYEYLPNGSLWDQLHTSRKIEMGWQIRYEVAVGAARGLEYLHHGCDRPVIHRDVKSSNILLDSDWKPRIADFGLAKILQDACGGGDSSHVIAGTLGYIAPEYAYTCKINEKSDVYSFGVVLMELVTGRKPNEPEFGENKDIVQWAHSRMRDLKGNLKDMVDPSISEVQVEDPIKVLRIALRCTAKTPSTRPSMRMVVHMLEEAEPCNFIDIVVKKECAK 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6033034 6036672 + CmaCh19G005140.1 Cma19g00514 315202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00514 991 PANTHER RECEPTOR-LIKE PROTEIN KINASE HAIKU2 26 983 - -
Cma19g00514 991 Gene3D Ribonuclease Inhibitor 302 375 IPR032675 -
Cma19g00514 991 Gene3D Ribonuclease Inhibitor 376 489 IPR032675 -
Cma19g00514 991 Gene3D Ribonuclease Inhibitor 200 301 IPR032675 -
Cma19g00514 991 Gene3D Transferase(Phosphotransferase) domain 1 777 983 - -
Cma19g00514 991 SMART LRR_typ_2 496 520 IPR003591 -
Cma19g00514 991 SMART LRR_typ_2 233 257 IPR003591 -
Cma19g00514 991 SMART LRR_typ_2 304 327 IPR003591 -
Cma19g00514 991 SMART LRR_typ_2 111 134 IPR003591 -
Cma19g00514 991 SMART LRR_typ_2 544 568 IPR003591 -
Cma19g00514 991 SMART LRR_typ_2 183 209 IPR003591 -
Cma19g00514 991 Pfam Leucine rich repeat 522 580 IPR001611 GO:0005515
Cma19g00514 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
Cma19g00514 991 Gene3D Phosphorylase Kinase; domain 1 671 776 - -
Cma19g00514 991 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 26 983 - -
Cma19g00514 991 Pfam Leucine rich repeat N-terminal domain 43 84 IPR013210 -
Cma19g00514 991 SMART serkin_6 684 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00514 991 Gene3D Ribonuclease Inhibitor 43 199 IPR032675 -
Cma19g00514 991 Gene3D Ribonuclease Inhibitor 490 615 IPR032675 -
Cma19g00514 991 ProSiteProfiles Protein kinase domain profile. 684 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00514 991 Pfam Protein kinase domain 687 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00514 991 SUPERFAMILY L domain-like 45 212 - -
Cma19g00514 991 SUPERFAMILY RNI-like 358 604 - -
Cma19g00514 991 SUPERFAMILY Protein kinase-like (PK-like) 664 973 IPR011009 -
Cma19g00514 991 ProSitePatterns Protein kinases ATP-binding region signature. 690 712 IPR017441 GO:0005524
Cma19g00514 991 SUPERFAMILY L domain-like 201 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00230 Cma-Chr12:1131420 Cma19g00514 Cma-Chr19:6033034 0 dispersed
Cma13g00622 Cma-Chr13:5990548 Cma19g00514 Cma-Chr19:6033034 0 dispersed
Cma15g00555 Cma-Chr15:2582225 Cma19g00514 Cma-Chr19:6033034 0 dispersed
Cma19g00514 Cma-Chr19:6033034 Cma03g01291 Cma-Chr3:8390120 1.11E-16 dispersed
Cma19g00514 Cma-Chr19:6033034 Cma09g00611 Cma-Chr9:2889430 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69334 PF00069 Pkinase 4.00E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00514 - - cmos:111455011 1863.2