Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00517 ATGGCCGTCGAATACGAATGCTGCACCCCTAATTTCTTCATCCATATACTCATCATCGTCCTCTTGGTCATCTTTGCCGGCTTAATGTCTGGCCTTACCCTCGGCCTCATGTCCATGAGCCTCGTCGATCTCGAAGTACTTGCTAGGTCCGGCACCCCTAAGGATCGCAAGCACGCCGCAAAGATATTGCCAGTAGTAAAAAACCAGCATTTATTGCTCTGCACCTTACTGATATGCAATGCGGCAGCCATGGAGGCACTTCCTATATTCCTTGACAGTCTGGTTACAGCTTGGGGTGCTATCCTAATCTCGGTGACCTTGATTCTTCTATTTGGCGAGATTATACCACAATCTGTTTGCTCTCGGTATGGTTTAGCGATTGGATCAACGGTTGCTCCTTTTGTCCGTGTTCTTGTCTGGATTTGCTTCCCTGTTGCATATCCAATCAGTAAGCTACTAGACGTTCTACTGGGTCATGGGCGTGTGGCTCTTTTCCGAAGAGCTGAGCTGAAAACACTCGTCAATTTGCACGGTAATGAGGCTGGAAAGGGTGGAGAATTGACACACGATGAAACCACTATTATTGCTGGAGCACTTGAACTGAGTGAGAAGACAGCTAGTGATGCCATGACTCCTATATCTGAAACTTTTGCTATTGATATTAATGCAAAGCTCGATAGGACTTTGATGAATCAAATTCTGGAGAAAGGGCATAGCAGGGTGCCAGTCTATTATGAAGAAGAAACCAACATTATTGGTCTTATCCTGGTTAAAAATTTGCTTACAATCCACCCAGACGATGAAGTTCCAGTAAAGAGTGTGACCATTCGAAGGATTCCTCGGGTTCCTGAAACTATGCCATTATATGACATTTTGAATGAGTTCCAGAAAGGTCATAGCCACATGGCCATTGTTGTTAAACAGTGCAACAAAATGAACGGAAAAGCTGATGACAAACTGGGCGACGATTCCCAGAGAGATGTTAAAATTGATGTGGATGGTGAAAAGCCCCCACAAGAAAAAACTTTGAAGAACAAGAGACCACTTCAGAAGTGGAAAAGCTTTCCCACCACAAACAATTCATTCCGGAGTGGCTCTAGAAGCAAGAAATGGACAAAGGATATGTACTCTGATATCCTGCAGATAGATGGAAGCCCTCTTCCTAAGCTTGCTGAGGAAGAAGAAGCTGTCGGTGTCATAACGATGGAAGATGTCATTGAAGAACTTTTGCAGGAGGAGATCTTCGACGAGACTGATCATCATTATGAGGACTCCTGA 1278 44.52 MAVEYECCTPNFFIHILIIVLLVIFAGLMSGLTLGLMSMSLVDLEVLARSGTPKDRKHAAKILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICFPVAYPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTPISETFAIDINAKLDRTLMNQILEKGHSRVPVYYEEETNIIGLILVKNLLTIHPDDEVPVKSVTIRRIPRVPETMPLYDILNEFQKGHSHMAIVVKQCNKMNGKADDKLGDDSQRDVKIDVDGEKPPQEKTLKNKRPLQKWKSFPTTNNSFRSGSRSKKWTKDMYSDILQIDGSPLPKLAEEEEAVGVITMEDVIEELLQEEIFDETDHHYEDS 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6055358 6060919 - CmaCh19G005170.1 Cma19g00517 315205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00517 425 Pfam Cyclin M transmembrane N-terminal domain 17 190 IPR002550 -
Cma19g00517 425 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Cma19g00517 425 PANTHER AND COBALT EFFLUX PROTEIN CORC, PUTATIVE-RELATED 1 425 - -
Cma19g00517 425 Gene3D - 191 322 IPR046342 -
Cma19g00517 425 MobiDBLite consensus disorder prediction 351 366 - -
Cma19g00517 425 SUPERFAMILY CBS-domain pair 194 411 IPR046342 -
Cma19g00517 425 Gene3D - 375 417 IPR046342 -
Cma19g00517 425 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 425 IPR045095 GO:0010960
Cma19g00517 425 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Cma19g00517 425 MobiDBLite consensus disorder prediction 329 369 - -
Cma19g00517 425 MobiDBLite consensus disorder prediction 329 347 - -
Cma19g00517 425 ProSiteProfiles CBS domain profile. 210 271 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00517 K16302 CNNM; metal transporter CNNM - csv:101210339 790.801
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01686 Cma19g00517 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01171 Cma-Chr8:7209028 Cma19g00517 Cma-Chr19:6055358 3.60E-147 dispersed
Cma17g00273 Cma-Chr17:1418758 Cma19g00517 Cma-Chr19:6055358 1.69E-150 dispersed
Cma19g00052 Cma-Chr19:290976 Cma19g00517 Cma-Chr19:6055358 5.87E-145 dispersed
Cma01g01088 Cma-Chr1:8008478 Cma19g00517 Cma-Chr19:6055358 3.13E-10 transposed
Cma01g01908 Cma-Chr1:12453841 Cma19g00517 Cma-Chr19:6055358 1.35E-174 transposed
Cma07g00628 Cma-Chr7:2725092 Cma19g00517 Cma-Chr19:6055358 0 transposed
Cma09g00990 Cma-Chr9:5056391 Cma19g00517 Cma-Chr19:6055358 2.29E-12 transposed
Cma16g00096 Cma-Chr16:430111 Cma19g00517 Cma-Chr19:6055358 1.60E-163 transposed
Cma11g01686 Cma-Chr11:11120800 Cma19g00517 Cma-Chr19:6055358 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g809 . . . . . Bpe12g00728 . . Cmo19g00530 Cmo11g01436 . . . . Sed06g0826 Cpe04g00341 Cpe15g00413 Bhi05g00995 Tan02g1077 Cmetu01g2263 Lac12g0132 Hepe02g0671 . . Cla02g00721 Cam02g0768 Cec02g0765 Cco02g0796 Clacu02g0763 Cmu02g0756 Cre02g1070 . Cone8ag1049 . . Lsi03g00638 Csa07g00654 . Cme01g00149 . Blo13g00274 Bda15g00473 . . . . Bma08g00022 . . . Cma11g01686 Cma19g00517 Car11g01154 Car19g00392 . . . . . . . . . . . . . . . . . . Chy01g00158 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001514 3 4 3 3 3 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 3 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00517 Cma_Chr19 FPKM 4.062115 4.059765 37.339699 35.525578 13.954446 14.962662 15.955874 3.875859 4.070001 3.913004