Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00527 ATGGCTTCCCACACAATTCTCTCTACCATATGCTTAGTAGGGTTCCTCCTAGCTCCCATCTCCAACGCCCAAAACTCCCCAGAAGACTTCGTCGACACCCACAACGACATCCGAGCGGCAGTCGGGGTCGGACCAGTCTCTTGGGACAATAATCTCGCCGCCTATGCTCAGAATTACGCCTATAGTAAGATCGAAACCTGCAAGATGGAGCACTCTAATGGACCTTATGGCGAAAACCTTGCCGAGGGGTACGGCGAGATGACCGCCGTGGAAGCAGTGAAGTTTTGGGCGACCGAGAAAAAGTTCTACAACCACCATTTGAATCGATGCGTCGGGGACGAGTGCGGTCATTATACACAAATAGTGTGGAGGGACACTAAGAACATAGGGTGTGCTAGAGTGAAATGTGAGAACAATTGGGTTTTTGTGATCTGCAGCTATTATCCTCCTGGAAACTATGTAGGCCAATATCCTTACTGA 480 49.58 MASHTILSTICLVGFLLAPISNAQNSPEDFVDTHNDIRAAVGVGPVSWDNNLAAYAQNYAYSKIETCKMEHSNGPYGENLAEGYGEMTAVEAVKFWATEKKFYNHHLNRCVGDECGHYTQIVWRDTKNIGCARVKCENNWVFVICSYYPPGNYVGQYPY 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6126791 6127270 + CmaCh19G005270.1 Cma19g00527 315215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00527 159 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 3 159 IPR001283 -
Cma19g00527 159 PRINTS Allergen V5/Tpx-1 family signature 46 64 IPR001283 -
Cma19g00527 159 PRINTS Allergen V5/Tpx-1 family signature 92 105 IPR001283 -
Cma19g00527 159 PRINTS Allergen V5/Tpx-1 family signature 115 131 IPR001283 -
Cma19g00527 159 PRINTS Allergen V5/Tpx-1 family signature 142 155 IPR001283 -
Cma19g00527 159 Gene3D CAP 24 159 IPR035940 -
Cma19g00527 159 SMART SCP_3 25 155 IPR014044 -
Cma19g00527 159 CDD CAP_PR-1 27 159 - -
Cma19g00527 159 ProSitePatterns CRISP family signature 2. 142 153 IPR018244 GO:0005576
Cma19g00527 159 SUPERFAMILY PR-1-like 26 159 IPR035940 -
Cma19g00527 159 Pfam Cysteine-rich secretory protein family 32 147 IPR014044 -
Cma19g00527 159 ProSitePatterns CRISP family signature 1. 116 126 IPR018244 GO:0005576
Cma19g00527 159 PANTHER - 3 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00527 K13449 PR1; pathogenesis-related protein 1 - csv:101211323 288.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01688 Cma-Chr11:11143161 Cma19g00527 Cma-Chr19:6126791 2.06E-81 dispersed
Cma11g01689 Cma-Chr11:11147608 Cma19g00527 Cma-Chr19:6126791 6.93E-63 dispersed
Cma19g00525 Cma-Chr19:6118588 Cma19g00527 Cma-Chr19:6126791 9.55E-57 dispersed
Cma19g00527 Cma-Chr19:6126791 Cma04g02027 Cma-Chr4:12876535 5.39E-57 dispersed
Cma19g00530 Cma-Chr19:6142469 Cma19g00527 Cma-Chr19:6126791 4.86E-53 dispersed
Cma19g00531 Cma-Chr19:6144072 Cma19g00527 Cma-Chr19:6126791 4.86E-53 dispersed
Cma19g00526 Cma-Chr19:6122210 Cma19g00527 Cma-Chr19:6126791 1.07E-56 tandem
Cma19g00527 Cma-Chr19:6126791 Cma19g00528 Cma-Chr19:6131248 3.43E-53 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g805 Blo02g00912 Blo03g00050 . . . . Bma05g00634 Bma12g00314 Cmo19g00538 Cmo11g01434 . . . . Sed06g0830 . Cpe15g00418 Bhi05g00999 Tan02g1068 Cmetu01g1966 Lac12g0134 . . . Cla02g00718 Cam02g0764 Cec02g0762 Cco02g0790 Clacu02g0757 Cmu02g0752 Cre02g1067 . . . . Lsi03g00628 Csa07g00656 . Cme01g00146 . . . . . Bpe05g00457 . . . Cmo04g00453 . . Cma19g00527 . . . . . . . . . . . . . . . . . . . . Chy01g00155 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002412 6 2 3 5 3 2 0 2 2 2 2 2 2 2 2 2 2 1 1 2 2 4 0 2 1 0 2 2 2 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00527 Cma_Chr19 FPKM 21.35 24.8556 0.0 0.181751 9.331106 8.857219 8.01343 0.148767 0.126076 0.0