Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00533 ATGGATCTTTTCAAGCTCTCCCTCTCCCTCTTCTATGTCGTCTTGAGCTTTGCCATGTTTCATTCCTCTCTCGCTCAAGACTCGCCTCAAGACTTTGTCAATGCCCACAATGCAGCTCGTGCCCAAGTTGGTGTCGGGCCAATTCGGTGGGACGAAAGGGTAGCTAGTTTTGCTCGACAATATGCCAACCAACGCATCAATGATTGTCGATTGGTGCACTCAGGTGGACCATATGGGGAGAATATTGCATGGGGTAGCCCTGACTTGTCAGGGACTAATGCTGTTCGGATGTGGGTTGATGAGAAACAATTCTACAATCCTAGCACTAATACTTGTGCAGCTGGCAAGGTGTGTGGCCATTACACTCAAGTGGTGTGGAGAAACTCGGTGAGAATTGGATGTGCTAAAGTGAGATGCACAAACAATCGTGGTACATTCATCACTTGCAACTATGATCCACCAGGCAATGTCGTAGGTCAAAGGCCATTTTGA 492 47.76 MDLFKLSLSLFYVVLSFAMFHSSLAQDSPQDFVNAHNAARAQVGVGPIRWDERVASFARQYANQRINDCRLVHSGGPYGENIAWGSPDLSGTNAVRMWVDEKQFYNPSTNTCAAGKVCGHYTQVVWRNSVRIGCAKVRCTNNRGTFITCNYDPPGNVVGQRPF 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6152535 6153026 + CmaCh19G005330.1 Cma19g00533 315221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00533 163 CDD CAP_PR-1 29 163 - -
Cma19g00533 163 ProSitePatterns CRISP family signature 1. 119 129 IPR018244 GO:0005576
Cma19g00533 163 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 17 163 IPR001283 -
Cma19g00533 163 ProSitePatterns CRISP family signature 2. 146 157 IPR018244 GO:0005576
Cma19g00533 163 Gene3D CAP 27 163 IPR035940 -
Cma19g00533 163 PANTHER PATHOGENESIS-RELATED PROTEIN 1 17 163 - -
Cma19g00533 163 SUPERFAMILY PR-1-like 18 163 IPR035940 -
Cma19g00533 163 SMART SCP_3 27 159 IPR014044 -
Cma19g00533 163 PRINTS Allergen V5/Tpx-1 family signature 48 66 IPR001283 -
Cma19g00533 163 PRINTS Allergen V5/Tpx-1 family signature 94 107 IPR001283 -
Cma19g00533 163 PRINTS Allergen V5/Tpx-1 family signature 118 134 IPR001283 -
Cma19g00533 163 PRINTS Allergen V5/Tpx-1 family signature 146 159 IPR001283 -
Cma19g00533 163 Pfam Cysteine-rich secretory protein family 33 151 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00533 K13449 PR1; pathogenesis-related protein 1 - csv:101212539 268.085
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00559 Cma-Chr2:3164062 Cma19g00533 Cma-Chr19:6152535 5.63E-35 dispersed
Cma11g01690 Cma-Chr11:11158319 Cma19g00533 Cma-Chr19:6152535 2.99E-86 dispersed
Cma19g00533 Cma-Chr19:6152535 Cma19g00535 Cma-Chr19:6163481 3.16E-91 dispersed
Cma20g01146 Cma-Chr20:9087953 Cma19g00533 Cma-Chr19:6152535 3.85E-36 dispersed
Cma19g00532 Cma-Chr19:6148546 Cma19g00533 Cma-Chr19:6152535 5.35E-56 tandem
Cma19g00533 Cma-Chr19:6152535 Cma19g00534 Cma-Chr19:6156782 1.14E-36 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g795 . . Bda06g01147 . Bpe07g00299 . . Bma12g00311 Cmo19g00542 . . . . . . Cpe04g00337 Cpe15g00421 . . . . . . . Cla02g00708 Cam02g0744 Cec02g0756 Cco02g0783 Clacu02g0751 Cmu02g0745 Cre02g1060 Cone12ag1024 Cone8ag1057 . . Lsi03g00624 Csa07g00662 . Cme01g00141 . . . . . . . . . . . . Cma19g00533 . . . . . . . . . . . . . . . . . . . . Chy01g00152 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00533 Cma_Chr19 FPKM 54.194107 58.47229 12.757962 9.973082 584.406189 774.739319 565.09906 796.222229 882.441101 793.009583