Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00535 ATGGATCTTTTCAAGCTCTCCCTCCTCCTCTTCTATGTCCAGAGCTTTGCCATGCTTCCCTCTTTTCTCGCTCAAGACTCGCCTCAAGACTATGTCGATGAACACAACAAAGCTCGTGCCGAAGTTGGTGTCGGGCCGGTCCAGTGGGACGAAAGTGTAGCTAATTTTGCTCGACAATATGCCAACGAACGCATCAATGACTGTAAACTGAAGCACTCAGACGGATCATTTGGGGAGAATATTTCATATGGTTTTCCTGACTTATCAGGCACTGCTGCAGTTCAGGATTGGGTCAAAGAGAAACAATTCTACGATCCCCACACCAATACTTGTGCACCTCACGCGCTGTGTGGCCATTACACTCAAGTGGTTTGGAGAAACTCAGTGAGGATTGGATGTGCTAAAGTTATATGCACAAACAATCTTGGTACATTCATCACTTGCAACTATGATCCACCAGGTAATATCCCAGGCGAAAGGCCATACAGTACTGATCCGTTAATCAGAATTGCTAAATAA 519 45.47 MDLFKLSLLLFYVQSFAMLPSFLAQDSPQDYVDEHNKARAEVGVGPVQWDESVANFARQYANERINDCKLKHSDGSFGENISYGFPDLSGTAAVQDWVKEKQFYDPHTNTCAPHALCGHYTQVVWRNSVRIGCAKVICTNNLGTFITCNYDPPGNIPGERPYSTDPLIRIAK 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6163481 6163999 + CmaCh19G005350.1 Cma19g00535 315223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00535 172 ProSitePatterns CRISP family signature 2. 145 156 IPR018244 GO:0005576
Cma19g00535 172 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Cma19g00535 172 PRINTS Allergen V5/Tpx-1 family signature 93 106 IPR001283 -
Cma19g00535 172 PRINTS Allergen V5/Tpx-1 family signature 117 133 IPR001283 -
Cma19g00535 172 PRINTS Allergen V5/Tpx-1 family signature 145 158 IPR001283 -
Cma19g00535 172 PANTHER PATHOGENESIS-RELATED PROTEIN 1 21 162 - -
Cma19g00535 172 ProSitePatterns CRISP family signature 1. 118 128 IPR018244 GO:0005576
Cma19g00535 172 CDD CAP_PR-1 28 162 - -
Cma19g00535 172 Gene3D CAP 23 166 IPR035940 -
Cma19g00535 172 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 21 162 IPR001283 -
Cma19g00535 172 Pfam Cysteine-rich secretory protein family 33 150 IPR014044 -
Cma19g00535 172 SUPERFAMILY PR-1-like 21 163 IPR035940 -
Cma19g00535 172 SMART SCP_3 26 158 IPR014044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00535 K13449 PR1; pathogenesis-related protein 1 - csv:101212539 252.677
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00533 Cma-Chr19:6152535 Cma19g00535 Cma-Chr19:6163481 3.16E-91 dispersed
Cma19g00535 Cma-Chr19:6163481 Cma04g02023 Cma-Chr4:12839971 4.55E-52 dispersed
Cma19g00534 Cma-Chr19:6156782 Cma19g00535 Cma-Chr19:6163481 3.18E-24 tandem
Cma19g00535 Cma-Chr19:6163481 Cma19g00536 Cma-Chr19:6167461 3.94E-65 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g790 . Blo03g00054 Bda06g01150 . . . Bma05g00637 . Cmo19g00544 Cmo11g01430 . . . . Sed10g1935 . . Bhi05g01000 Tan02g1067 Cmetu01g2331 Lac12g0135 . . . Cla02g00703 Cam02g0736 Cec02g0750 Cco02g0776 Clacu02g0746 Cmu02g0741 Cre02g1054 . . . . Lsi03g00608 Csa07g00665 . Cme01g00137 . . . . . . . . . . . . Cma19g00535 . . . . . . . . . . . . . . . . . . . . Chy01g00149 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000383 3 2 3 4 2 4 0 3 3 3 3 3 4 4 5 13 4 4 9 2 5 4 0 8 7 4 3 7 5 6 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00535 Cma_Chr19 FPKM 0.165703 0.0 43.440159 51.34848 133.281006 183.108154 133.461395 0.057595 0.116602 0.024284