Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00539 ATGAGGGAGTGCATCTCGATTCACATCGGTCAGGCTGGGATTCAGGTCGGCAATGCATGCTGGGAACTCTACTGCCTTGAACATGGAATTCAGCCTGATGGCCAAATGCCGAGTGACACGACTGTAGGCGGAGGCGATGATGCCTTCAATACCTTCTTCAGTGAAACAGGTGCAGGCAAGCATGTTCCTCGAGCTCTTTTCGTTGATCTAGAGCCTACCGTCATTGATGAGGTGAGGACTGGAATGTATCGCCAGTTGTTCCATCCTGAACAGCTAATTAGCGGTAAGGAAGATGCTGCCAACAACTTTGCTCGTGGCCACTACACCATTGGCAAGGAGATCGCTGATCTCTGTTTGGATCGCATTAGAAAGCTCGCTGACAATTGCACTGGACTCCAAGGCTTCCTTGTTTTTAACGCTGTCGGTGGGGGTACTGGGTCTGGTCTTGGCTCTCTCCTTTTGGAGCGTTTGTCTGTTGACTATGGCAAGAAATCAAAGCTTGGTTTCACAGTTTATCCCTCTCCACAAGTTTCCACCTCTGTTGTTGAACCCTACAACAGTGTTCTCTCAACCCACTCTCTCCTTGAACATACAGATGTTTCTGTGCTCCTTGACAACGAGGCCATTTATGACATTTGTAGACGTTCCCTTGCAATTGAGCGACCCACCTACACAAACCTCAACCGCCTCATCTCTCAGGTGATTTCATCCCTGACAGCCTCTCTACGGTTCGATGGAGCTCTGAATGTGGACGTAACTGAGTTCCAAACGAATTTGGTCCCTTACCCAAGAATCCACTTCATGCTTTCCTCCTACGCTCCAGTGATCTCTGCAGAGAAGGCATACCACGAACAACTCTCTGTAGCGGAGATCACCAGCAGCGCCTTCGAGCCATCTTCCATGATGGCCAAGTGCGATCCCCGCAATGGGAAGTACATGGCTTGCTGTCTGATGTACAGAGGAGATGTTGTGCCAAAGGATGCCAACGCCGCCGTTGCCACCATAAAAACCAAGCGCACGATCCAGTTCGTGGACTGGTGCCCCACTGGTTTCAAGTGCGGGATCAACTACCAGGCGCCGACGGTGGTTCCGGGTGGCGACCTGGCCAGAGTGCAGAGGGCAATCTGTATGATATCGAACTCCACCAGCGTGGCAGAGGTGTTCTGTCGCATAGACCACAAGTTTGATCTGATGTATGCGAAGAGGGCGTTTGTGCATTGGTACGTGGGGGAGGGCATGGAGGAGGGAGAGTTCTCTGAAGCTCGTGAGGATCTTGCGGCCCTTGAGAAGGATTATGAGGAAGTGGGTGCTGAGTCTGATGAAGGTGGTGAGGATGACGATCAGGAGGAGTACTGA 1356 51.55 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDTTVGGGDDAFNTFFSETGAGKHVPRALFVDLEPTVIDEVRTGMYRQLFHPEQLISGKEDAANNFARGHYTIGKEIADLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNEAIYDICRRSLAIERPTYTNLNRLISQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITSSAFEPSSMMAKCDPRNGKYMACCLMYRGDVVPKDANAAVATIKTKRTIQFVDWCPTGFKCGINYQAPTVVPGGDLARVQRAICMISNSTSVAEVFCRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESDEGGEDDDQEEY 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6218313 6221043 - CmaCh19G005390.1 Cma19g00539 315227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00539 451 MobiDBLite consensus disorder prediction 430 451 - -
Cma19g00539 451 Gene3D Helix hairpin bin 384 436 IPR023123 -
Cma19g00539 451 PANTHER TUBULIN 1 449 IPR000217 GO:0005874|GO:0007017
Cma19g00539 451 CDD alpha_tubulin 2 435 - -
Cma19g00539 451 PANTHER TUBULIN ALPHA CHAIN 1 449 - -
Cma19g00539 451 Gene3D Tubulin/FtsZ, GTPase domain 1 268 IPR036525 -
Cma19g00539 451 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 Coils Coil 418 438 - -
Cma19g00539 451 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Tubulin signature 380 408 IPR000217 GO:0005874|GO:0007017
Cma19g00539 451 SMART Tubulin_4 49 246 IPR003008 GO:0005525
Cma19g00539 451 MobiDBLite consensus disorder prediction 434 451 - -
Cma19g00539 451 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525
Cma19g00539 451 Gene3D - 269 383 IPR037103 -
Cma19g00539 451 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 45 58 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 88 101 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 120 128 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 148 160 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 161 172 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 214 226 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 274 289 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 321 342 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 347 360 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 360 379 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 385 401 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 PRINTS Alpha-tubulin signature 422 438 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cma19g00539 451 SUPERFAMILY Tubulin C-terminal domain-like 246 436 IPR008280 -
Cma19g00539 451 SMART Tubulin_C_4 248 393 IPR018316 -
Cma19g00539 451 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 244 IPR036525 -
Cma19g00539 451 Pfam Tubulin C-terminal domain 263 392 IPR018316 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00539 K07374 TUBA; tubulin alpha - csv:101213258 841.647
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01691 Cma19g00539 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00539 Cma-Chr19:6218313 Cma20g00010 Cma-Chr20:28556 0 dispersed
Cma11g01691 Cma-Chr11:11163077 Cma19g00539 Cma-Chr19:6218313 0 wgd
Cma16g00305 Cma-Chr16:1420859 Cma19g00539 Cma-Chr19:6218313 0 wgd
Cma19g00539 Cma-Chr19:6218313 Cma03g00872 Cma-Chr3:6454952 0 wgd
Cma19g00539 Cma-Chr19:6218313 Cma04g00431 Cma-Chr4:2206823 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g770 Blo02g00917 Blo03g00060 Bda06g01159 . Bpe07g00293 . . Bma12g00302 Cmo19g00553 Cmo11g01429 . . . . . Cpe04g00335 Cpe15g00428 . . . . . . . Cla02g00698 Cam02g0731 Cec02g0746 Cco02g0770 Clacu02g0742 Cmu02g0737 Cre02g1050 . . . . Lsi03g00600 Csa07g00669 . Cme01g00135 . . . . . . . . Sed07g1149 Cmo04g00462 Cmo16g00324 Cma11g01691 Cma19g00539 Car11g01152 Car19g00396 Cpe14g00253 Cpe01g00388 Bhi11g01102 Tan01g0605 Cmetu08g1396 . Hepe07g0394 Mch10g0408 . . . . . . . . Lsi03g01006 . Chy01g00146 Cme07g02211
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000221 6 4 6 6 4 5 8 5 5 5 5 5 8 5 5 9 5 12 9 5 5 4 4 5 5 4 5 6 3 5 168
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00539 Cma_Chr19 FPKM 0.794824 0.462327 0.501351 0.266262 2.054957 2.572502 2.305569 1.735862 1.906396 1.682844