Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00541 ATGCTTGTTCAGGGTTGGAAGCTTGAAAGCGTCACACCAGCGGCAATCCTCATGTTCCATAGTTGTTCTTCTTTGCAGATGCGAACTATAGGAGCAATACGACCTCAATTGACGGAGTTATTCGACCGTTCGTGTTTCAGAAGCTTCAGAGTTAGAGCTCTCTCGTCTTCATCTCTGGCTTCCTCGAATCAATCCCGCGGTGGTCTTCCTCGCTTCTTCTCCCAAGTTCTTCCTTCTTATAAGGGTGATATTATTCGTCTAGAAGGCGATGAAGTCTGGCATATGACTAAAGTTTTGAGGTTGAAGACTGATGATAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACATTCGTGTCAACGGAATCGACATTCTGGCAATGGAAGATCCAAAATCTGTTCTACCTCAAAGCACACAGTGGCATGTATTTGCAGCTTGTGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAGAAATGTACAGAACTGGGTGCCAGTAGCGTAACTCCACTGCTAACAGAACGTTGCGCTACCATATCTGATAACCGGGTGCACAGATTTGAACGTATCACATTGGCAGCAACTAAACAATGTCAAAGACTGCACCAAATGAGTCTGAATTCTCCATTGAAGATTGATGGTCTTTTGCACATTATTAATGAGTCGAAGCTATCTTTTGTAGCAGTTGCAGAAGCAACCCCGCTTGTAAGTGCATTAGCTTCAATTGAAACTGAGTCTGGTGGGCTTTTGGTCGTCGGACCTGAAGGAGACTTCACCGAAAAAGAGGTCAACATGATCAAAGAAGCTGGTGCAATTGCAGTTGTTCTAATCGTTAATCTCTCTTTCAGGATATCATCAAGATCAGCACCATTTCTAAGCCTTAAAGTCGAGCGTTTGAGGCATGGAGCATGTCGACAATTTGAGACATTCTACAAAACAACTTGA 969 44.07 MLVQGWKLESVTPAAILMFHSCSSLQMRTIGAIRPQLTELFDRSCFRSFRVRALSSSSLASSNQSRGGLPRFFSQVLPSYKGDIIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGIDILAMEDPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRFERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESKLSFVAVAEATPLVSALASIETESGGLLVVGPEGDFTEKEVNMIKEAGAIAVVLIVNLSFRISSRSAPFLSLKVERLRHGACRQFETFYKTT 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6226516 6232059 + CmaCh19G005410.1 Cma19g00541 315229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00541 322 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 84 282 IPR006700 GO:0006364|GO:0008168
Cma19g00541 322 Pfam RNA methyltransferase PUA domain 87 124 IPR046887 -
Cma19g00541 322 SUPERFAMILY PUA domain-like 73 127 IPR015947 -
Cma19g00541 322 SUPERFAMILY alpha/beta knot 145 284 IPR029028 -
Cma19g00541 322 CDD RsmE-like 152 284 IPR046886 -
Cma19g00541 322 Gene3D - 68 288 IPR029026 -
Cma19g00541 322 Pfam RNA methyltransferase domain 147 284 IPR046886 -
Cma19g00541 322 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 69 284 IPR006700 GO:0006364|GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00541 K09761 rsmE; 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] - csv:101213733 459.914
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g763 Blo02g00922 Blo03g00061 . . . . . . Cmo19g00555 . . . . . . . Cpe15g00430 . . . . . . . Cla02g00696 Cam02g0729 Cec02g0744 Cco02g0768 Clacu02g0740 Cmu02g0735 Cre02g1048 . . Cone3ag1042 . Lsi03g00598 Csa07g00671 . Cme01g00133 . . . . . . . . Sed07g1141 Cmo04g00467 . . Cma19g00541 . Car19g00398 . . Bhi11g01118 Tan01g0612 Cmetu07g1601 . . Mch10g0413 . . . . . . . . . . Chy01g00144 Cme07g02206
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011527 0 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 2 5 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00541 Cma_Chr19 FPKM 5.357004 5.42687 8.044629 6.558215 13.13855 15.12231 12.310725 8.647367 7.802998 6.025542