Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00542 ATGGCTGAGATGTACTTAACAGAGAAGATGGTTCAGCAACAACTTGAGAACTCTTCCACTTCTTCAATTCCCGAGAGAGATGAAATGGACGATGCAGTTCAGCAGTCAGGCAACGATGAGAGTTCTCCTCCTAAAATGTCGTTGGAAGGCAATATGGATGCTTCCCATGTGGGCAGGGACAGCCATGGGACCCGGACGAGTACTACCCAGAGCGCTATAAGCAAACACCTCGACGTGGAGGAACTCGAAATGCTGTTGGAGGCATACTTTGTGCAAATTGATGGTACACTCAACAAACTCTCCACGAAAGATGGTTCAAATGGAAGTATAGAAGTCAATAGAATTGCTTTAAGGTATATCCATGAGCTGAGGGAGTATGTGGATGTCACAGAAGATTACATCAACATAATGCTGGATGACAAACAAAACCATCTTCTACAAATGGGAGTAATGTTGACAACAGCAACCCTTGTCGTGAGCGCGTTCATCGTGGTGGCAGGTATCTTCGGGATGAACATCCATATTGAACTGTTTGAACCCAAAAAAGCAGGCATGCCAGAGTTCCTGTGGACTGTTGGTGGTGGCACTACTGGAAGCATCTTGTTGTATGTTGTTGCCATCGCTTGGTGCAAGCACAAACCCTTGCTTGAGTAG 654 45.87 MAEMYLTEKMVQQQLENSSTSSIPERDEMDDAVQQSGNDESSPPKMSLEGNMDASHVGRDSHGTRTSTTQSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTKDGSNGSIEVNRIALRYIHELREYVDVTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFIVVAGIFGMNIHIELFEPKKAGMPEFLWTVGGGTTGSILLYVVAIAWCKHKPLLE 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6234736 6236640 + CmaCh19G005420.1 Cma19g00542 315230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00542 217 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 1 102 IPR039204 -
Cma19g00542 217 Pfam CorA-like Mg2+ transporter protein 110 208 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma19g00542 217 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 120 217 - -
Cma19g00542 217 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 120 217 IPR039204 -
Cma19g00542 217 MobiDBLite consensus disorder prediction 1 71 - -
Cma19g00542 217 PANTHER MAGNESIUM TRANSPORTER MRS2-D-RELATED 1 102 - -
Cma19g00542 217 Gene3D Magnesium transport protein CorA, transmembrane region 1 145 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01693 Cma19g00542 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00542 Cma-Chr19:6234736 Cma01g00188 Cma-Chr1:840566 6.87E-30 dispersed
Cma11g01693 Cma-Chr11:11177026 Cma19g00542 Cma-Chr19:6234736 1.76E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00542 - - csv:101213978 323.168