Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00547 ATGGCCAGCTTTGTAGGAACCACACAGAGGTGCATGGCCTGTGACAAGACGGTTTATCTTGTTGATAAGCTTACCGCTGATAATAGGATCTTCCATAAGCCTTGCTTCAGATGCTACCATTGTAAAGGCACCCTCAAGCTGAGCAACTATTGTTCCTTTGAGGGAGTGCTGTATTGCAGGCCTCACTATGATCAACTCTTCAAGAGAACTGGCAGCCTTGACAAGAGCTTTGAAGGAACTCCAAAAATCACGAAACCTGAAAAGCCCACTGAAAATGAGAATGCAAAGTCAGTCTCCTCCATGTTTGGTGGCACTAGAGATAAATGTGCAGGCTGCATCAAGACGGTTTATCCCATTGAAAAGGTAACGGTAAACGGGACGGCGTACCACAAGAGCTGCTTCAAATGTAGCCATGGAGGGTGCACAATAAGCCCATCAAACTACATAGCACATGAGGGGAAGCTGTACTGCAAGCACCATCACATTCAACTGTTCAAGGAGAAGGGAAACTACAGCCAGCTTGAAACTGAGCGCCAAAAGGAGAATTCAGTGCCAATCAATACTCTAGATGCTAATAATCCAATGGAGATTGCAGCTGAATCTTAG 606 45.54 MASFVGTTQRCMACDKTVYLVDKLTADNRIFHKPCFRCYHCKGTLKLSNYCSFEGVLYCRPHYDQLFKRTGSLDKSFEGTPKITKPEKPTENENAKSVSSMFGGTRDKCAGCIKTVYPIEKVTVNGTAYHKSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFKEKGNYSQLETERQKENSVPINTLDANNPMEIAAES 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6261419 6262805 - CmaCh19G005470.1 Cma19g00547 315235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00547 201 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Cma19g00547 201 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Cma19g00547 201 SMART lim_4 10 62 IPR001781 -
Cma19g00547 201 SMART lim_4 108 160 IPR001781 -
Cma19g00547 201 MobiDBLite consensus disorder prediction 177 201 - -
Cma19g00547 201 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Cma19g00547 201 CDD LIM1_SF3 7 69 - -
Cma19g00547 201 Pfam LIM domain 11 65 IPR001781 -
Cma19g00547 201 Pfam LIM domain 109 164 IPR001781 -
Cma19g00547 201 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Cma19g00547 201 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Cma19g00547 201 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Cma19g00547 201 Gene3D Cysteine Rich Protein 104 173 - -
Cma19g00547 201 Gene3D Cysteine Rich Protein 5 75 - -
Cma19g00547 201 PANTHER OS06G0237300 PROTEIN 1 183 IPR045268 GO:0051015
Cma19g00547 201 MobiDBLite consensus disorder prediction 78 99 - -
Cma19g00547 201 CDD LIM2_SF3 109 169 - -
Cma19g00547 201 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM1 1 183 - -
Cma19g00547 201 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00547 K09377 CSRP; cysteine and glycine-rich protein - csv:101214700 375.941
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01697 Cma19g00547 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01782 Cma-Chr1:11936942 Cma19g00547 Cma-Chr19:6261419 3.50E-101 wgd
Cma11g01697 Cma-Chr11:11202373 Cma19g00547 Cma-Chr19:6261419 9.61E-130 wgd
Cma12g00601 Cma-Chr12:3143187 Cma19g00547 Cma-Chr19:6261419 7.12E-108 wgd
Cma19g00547 Cma-Chr19:6261419 Cma05g00134 Cma-Chr5:589948 1.50E-14 wgd
Cma19g00547 Cma-Chr19:6261419 Cma09g00294 Cma-Chr9:1210659 1.36E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g720 . . . . . . . . Cmo19g00561 Cmo11g01422 . . . . Sed10g1170 Cpe04g00329 Cpe15g00434 Bhi05g01027 Tan02g1724 Cmetu03g1320 Lac12g0158 . . . Cla02g00689 Cam02g0721 Cec02g0735 Cco02g0757 Clacu02g0733 Cmu02g0729 Cre02g1040 . . . . Lsi03g00583 Csa07g00679 . Cme01g00126 . . . . . . . . . . . Cma11g01697 Cma19g00547 Car11g01146 Car19g00404 . . . . . . . . . . . . . . . . . . Chy01g00135 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000380 2 4 3 3 2 4 8 4 4 3 3 4 8 4 4 7 4 3 8 4 4 4 4 4 4 3 4 8 4 3 128
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36891 PF00412 LIM 1.70E-12 CL0167 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00547 Cma_Chr19 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0