Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00548 ATGGGTTTGTGGGAAGCTTTTCTCAATTGGCTTAGAAGTCTCTTTTTCAAGCAAGAGATGGAGTTATCTCTGATTGGGCTTCAGAATGCTGGAAAAACATCACTTGTAAATGTTATTGCAACGGGTGGATACAGTGAAGACATGATCCCAACGGTAGGATTTAACATGAAGAAGGTGACAAAAGGAAATGTAACAATAAAGCTTTGGGATCTTGGAGGCCAACCCAGATTCCGTAGTATGTGGGAAAGATATTGTCGTGCAGTCTCTGCAATTGTTTATGTTGTGGATGCTGCTGATTACGAGAATTTGTCCGTCTCAAAAAGTGAACTTCATGACTTGTTGAGTAAGCCTTCACTCAATGGGATCCCATTGCTGGTATTGGGTAACAAGATTGACAAACAGGGAGCTCTGTCCAAGCAGGATCTCACAGAACGAATGAGTGTGTGCAATTTCAGCTTCCAACGTCTAATTGTCGGAGGCATATTTGTATTTGGCAAATATGTCAGTTGTCCATCTGAGGCTTTGCTGATATCCAACTTCGCTGTCCTGTTTTGTGTTTTTATACCTTCGCACATACCTACATACATCGAGGCGGAGATTTCCTGTTCTTCTTCTTCTTTTTGCTGGCACTCTAAGAGAATCGGTTCATGTCGAACTGCTAAAATAGCTACTGCAATGGCGAAAGCTGATACGGCGTGTATCTCTCAAGTTATTTCGGCTGGAGATTCTTATTCATCTTTTGTCAATACGAATGGAACTGCTAATAGAGCGAAATTGGCTATTTCGTTGCAGATGCGATGGTGGAAGCTGATTTGA 816 41.91 MGLWEAFLNWLRSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMKKVTKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYENLSVSKSELHDLLSKPSLNGIPLLVLGNKIDKQGALSKQDLTERMSVCNFSFQRLIVGGIFVFGKYVSCPSEALLISNFAVLFCVFIPSHIPTYIEAEISCSSSSFCWHSKRIGSCRTAKIATAMAKADTACISQVISAGDSYSSFVNTNGTANRAKLAISLQMRWWKLI 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6264184 6273646 - CmaCh19G005480.1 Cma19g00548 315236

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00548 271 Gene3D - 3 161 IPR027417 -
Cma19g00548 271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 144 IPR027417 -
Cma19g00548 271 SMART arf_sub_2 1 171 - -
Cma19g00548 271 Pfam ADP-ribosylation factor family 9 152 IPR006689 GO:0003924|GO:0005525
Cma19g00548 271 ProSiteProfiles small GTPase Arf family profile. 13 271 - -
Cma19g00548 271 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8A 1 149 - -
Cma19g00548 271 SMART sar_sub_1 4 214 IPR006689 GO:0003924|GO:0005525
Cma19g00548 271 TIGRFAM small_GTP: small GTP-binding protein domain 18 146 IPR005225 GO:0005525
Cma19g00548 271 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Cma19g00548 271 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Cma19g00548 271 PRINTS GTP-binding SAR1 protein signature 21 44 IPR006689 GO:0003924|GO:0005525
Cma19g00548 271 ProSiteProfiles small GTPase SAR1 family profile. 1 214 - -
Cma19g00548 271 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 1 149 - -
Cma19g00548 271 CDD Arl10_like 21 146 IPR044154 GO:0003924|GO:0005525|GO:0015031
Cma19g00548 271 SMART rab_sub_5 20 163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00548 K07955 ARL8; ADP-ribosylation factor-like protein 8 - csv:101214940 291.197
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01699 Cma19g00548 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02289 Cma-Chr4:15969420 Cma19g00548 Cma-Chr19:6264184 4.15E-84 dispersed
Cma19g00548 Cma-Chr19:6264184 Cma05g00676 Cma-Chr5:3475208 2.15E-27 dispersed
Cma11g01699 Cma-Chr11:11219384 Cma19g00548 Cma-Chr19:6264184 2.50E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g718 . . . Bda08g00681 . . . . Cmo19g00562 Cmo11g01421 . . . . . Cpe04g00328 Cpe15g00435 . . . . . . . Cla02g00686 Cam02g0719 Cec02g0732 Cco02g0754 Clacu02g0729 Cmu02g0727 Cre02g1038 . Cone8ag1075 . Cone10ag1049 Lsi03g00582 Csa07g00680 . Cme01g00124 . . . . . . . . . . . Cma11g01699 Cma19g00548 Car11g01144 Car19g00406 . . . . . . . . . . . . . . . . . . Chy01g00134 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022373 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00548 Cma_Chr19 FPKM 18.573128 22.035658 14.441417 13.731109 12.641999 13.39593 13.098505 13.572391 13.779106 16.051437