Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00550 ATGGAAAAGAAGCAGATTGACGGCGATGACGATCGTCGTCCGTGGCAGTCTTACAACACTGTCTACACCAATGCAAAAGCCGGTATGGAAGGTGTTGACAAGGAGAAAGTACAAAGAATTGTCTATGAAATGAGTAAAGGGTCGAAATATTTTGAAAATGAGGAGCGGAAAGAGGCCATCATCAGAGAAAAGATTGAGAAGATGCGAGCTAGATGTATGCAGCTTACTGCAACGGATCTTTCTCAGTATCAAAAGGTTGCAGATAAAAGAATTTTGGAGCTGGAAAGTACACGTGACCTGTCAAGGATATGGTTGCATGTAGATATGGATGCTTTCTATGCCGCTGTTGAAACTTTAAGCAATCCTTTATTAGAGGGCAAGCCAATGGCTGTTGGTAGCATGTCGATGATTTCTACTGCTAACTATGAGGCTCGAAAATATGGTGTTCGTGCTGCTATGCCTGGTTTTATTGCACGTAGATTATGTCCGGAGTTAATTTTTGTTCCCACAGATTTCAAGAAGTATAATTATTACAGTGATTTAGCTAGAAAAGTATTCCGTAGGTATGACTCCAACTTCTTGGCTGCTAGTCTGGATGAAGCATACCTCGATATAACTGAAGTCTGCAAAGATCGAGGCCTTACTAGTGAACAAATTGCTATGGATCTCAGAACCAGTATTTATGAAGAAACTGGTCTTACGTGTAGTGCTGGGGTTGCTGCCAACCGACTACTTGCCAAGGTCTGCTCTGATATTAACAAACCAAATGGACAGTTCATTTTGCCAAATGACCGAAGAGCTATTGTAACATTCGTATCATCACTACCCATAAGAAAGATTGGTGGCATCGGAAAGGTCACTGAACATATCTTAAAGGATGCTTTGGGGATTAATACATGTGAGGAGATGCTACAGAAGGGTGGTCACCTCTGTGCGTTGTTTTCTATATCCTCAGCAGATTTTTTCTTGTCGGTTGGGCTTGGCCTTGGGAGCACCGATACTCCACAGGTGAGATTGCGTAAGAGCATCAGTAACGAAAGAACGTTTGCAGCCACTGCTGAAGAAACATTAATTTTCCAGAAACTTGCTGACCTTGCAGAGATGCTGTCTATGGACATGGAAAAAGAAGGTCTGAGCGGGCGAACACTGACGCTTAAACTAAAAACTGCATCCTTTGAGGTTAGAACCAGAGCTGTAACTTTGCAACAATACATTTGTTCTAGCAGTGACATCTTGCAACATGCATCAAAGCTGCTTAAGGCTGAACTGCCCATTTCTTTGAGACTAATCGGGTTGCGGATATCTCACTTCAATGAAGATGGAGCCATTGCTGGGTCTGATCCGGCTCAAACACCTATTACTCGATTTATTACATCAGGAGATGCTACTAGAAAGAATATGGGTGATTGTTGCACCTTAAATCCTGATCCTAACGTTCATGACTTCATGGATGAATCTGAAATTGATGTATTTATCAATGGCACTGAAACACACCATCAAGATAGTAGTCATCCAAGAATTGGCAATAATCTCTCGAATATGGATGACCGAAACTGTACATCCAGCAATGACGCTGAGAAGTCGGAGAAATTTAAGAATCTTTCGAGCAACGTCAGTACTGATCAGGTGGACAATTTGAATGGCTTTGTCCCTCGAATATCGGGCACAGCATGTGCTTCTTCCCCTAGAAACCTCGAAGGCAATCAGAATAGTAATGTCGAAGCCAGAACTAACGTCGAGGCAAGATCACCAGATAATAGTGGACAGAATCTGTGGATCGATGACTACAAATGTGCAATCTGTGGTGCCGAAGTACCAGAGAGTTTCATTGATGAAAGACAAGAGCACATGGATTTTCACATTGCGGAAAAACTCCAGGAAGAGGAATCTGGCATTCGTTCAAGAACCCTTACGCCAATCCGAAGGACTCCTGACAAGAACCAACTGACAAGTCAAAGGAAGCAGAAAAGGCAAAAGTCAACTCCAAAGAAAGAGGTCAAACACATTCCAATTGACTTATTCTTTGTGAAGAATAATCAGAAGTTTTAG 2049 42.22 MEKKQIDGDDDRRPWQSYNTVYTNAKAGMEGVDKEKVQRIVYEMSKGSKYFENEERKEAIIREKIEKMRARCMQLTATDLSQYQKVADKRILELESTRDLSRIWLHVDMDAFYAAVETLSNPLLEGKPMAVGSMSMISTANYEARKYGVRAAMPGFIARRLCPELIFVPTDFKKYNYYSDLARKVFRRYDSNFLAASLDEAYLDITEVCKDRGLTSEQIAMDLRTSIYEETGLTCSAGVAANRLLAKVCSDINKPNGQFILPNDRRAIVTFVSSLPIRKIGGIGKVTEHILKDALGINTCEEMLQKGGHLCALFSISSADFFLSVGLGLGSTDTPQVRLRKSISNERTFAATAEETLIFQKLADLAEMLSMDMEKEGLSGRTLTLKLKTASFEVRTRAVTLQQYICSSSDILQHASKLLKAELPISLRLIGLRISHFNEDGAIAGSDPAQTPITRFITSGDATRKNMGDCCTLNPDPNVHDFMDESEIDVFINGTETHHQDSSHPRIGNNLSNMDDRNCTSSNDAEKSEKFKNLSSNVSTDQVDNLNGFVPRISGTACASSPRNLEGNQNSNVEARTNVEARSPDNSGQNLWIDDYKCAICGAEVPESFIDERQEHMDFHIAEKLQEEESGIRSRTLTPIRRTPDKNQLTSQRKQKRQKSTPKKEVKHIPIDLFFVKNNQKF 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6287364 6295908 + CmaCh19G005500.1 Cma19g00550 315238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00550 682 Gene3D - 338 442 IPR036775 GO:0003684|GO:0006281
Cma19g00550 682 MobiDBLite consensus disorder prediction 532 549 - -
Cma19g00550 682 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 338 435 IPR036775 GO:0003684|GO:0006281
Cma19g00550 682 MobiDBLite consensus disorder prediction 624 665 - -
Cma19g00550 682 MobiDBLite consensus disorder prediction 504 519 - -
Cma19g00550 682 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 7 656 - -
Cma19g00550 682 ProSiteProfiles Zinc finger UBZ3-type profile. 591 628 IPR041298 -
Cma19g00550 682 PANTHER DNA POLYMERASE KAPPA 7 656 - -
Cma19g00550 682 Pfam impB/mucB/samB family 107 251 IPR001126 GO:0006281
Cma19g00550 682 Pfam impB/mucB/samB family C-terminal domain 340 441 IPR017961 GO:0003684|GO:0006281
Cma19g00550 682 Gene3D - 260 333 - -
Cma19g00550 682 SUPERFAMILY DNA/RNA polymerases 78 332 IPR043502 -
Cma19g00550 682 Hamap DNA polymerase IV [dinB]. 101 453 IPR022880 GO:0003887
Cma19g00550 682 MobiDBLite consensus disorder prediction 557 588 - -
Cma19g00550 682 Pfam Ubiquitin-Binding Zinc Finger 594 628 IPR041298 -
Cma19g00550 682 MobiDBLite consensus disorder prediction 496 588 - -
Cma19g00550 682 Coils Coil 51 71 - -
Cma19g00550 682 Gene3D - 109 259 IPR043128 -
Cma19g00550 682 Gene3D - 22 108 - -
Cma19g00550 682 ProSiteProfiles UmuC domain profile. 104 284 IPR001126 GO:0006281
Cma19g00550 682 Gene3D - 121 169 - -
Cma19g00550 682 CDD PolY_Pol_IV_kappa 105 437 IPR022880 GO:0003887
Cma19g00550 682 PIRSF DNA_pol_eta 449 679 - -
Cma19g00550 682 PIRSF DNA_pol_eta 96 218 - -
Cma19g00550 682 PIRSF DNA_pol_eta 212 421 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00550 K03511 POLK; DNA polymerase kappa [EC:2.7.7.7] - csv:101212452 1096.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00550 Cma-Chr19:6287364 Cma19g00572 Cma-Chr19:6422989 8.01E-36 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g708 . . . . . . . . Cmo19g00564 . . . . . . . Cpe15g00437 . . . . . . . Cla02g00683 Cam02g0717 Cec02g0730 Cco02g0752 Clacu02g0726 Cmu02g0724 Cre02g1036 Cone12ag1043 Cone8ag1076 . . Lsi03g00577 Csa07g00682 . Cme01g00122 . . . . . . . . . . . . Cma19g00550 . Car19g00408 . . . . . . . . . . . . . . . . . . Chy01g00132 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011596 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00550 Cma_Chr19 FPKM 2.162434 2.000963 3.985965 4.465409 2.669181 3.529311 3.29931 1.882053 1.941589 2.126121