Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00554 ATGGCTCATCTCACAGCCCCCATTGCAGAGGGAGATGATCAATGGAGCTCTCTCAATGGAGCCTTCACAGCCGATGAAGAAGAAGCGATGTTCGTGGCTCAGCTCTTCGCACCGCCCGACCCTTTCATGGCTAACCTTCATGATCTTCATCAACCTCCTTGTGAACCAGCTTCTTGTTCAAGCTTTTATAGGGTTTCACAAGAGAGTAGTGAGTTCAGTGGTGGAAGTTATTGCAGCCAATTGTTGTTCTCTGGTTCTGAAAATAATGATAATGATAATTATTATTATTGCAATCCAATGGATAATCATGATTTTAGCTTGGGAGAGCTTGGGAACAATAACAATGGCGGATTCCAGCTTGAAGATCATGAGGACTCCATGAATATAGAAGCTGTTCTGGGAGAAGAGGGCGGTAACCCACGTGATATCAATTGCAAGAAAAGATCAAGGGGATCTGGGGATTTACAGAAGAGGAGGAATGAGAAGTCAAAGAAAACTCAGAAGCTTATCACTGAAGAAGATGGCAATAATGCTGCCCATAACAGGCAAAGCACAAGCAGCTATTGCTCGGAAGACGAATCCAATGCCTCGCTCGAGCTGAACGGAGGAGTTAATAACTCGGGACCGAGTCCGAACGGGCCGACCAAATCCCGAGCCAGCAGAGGTTCAGCTACTGATCCACAAAGCCTCTATGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAGACTCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAGCTTCAAATCAAGCTATTAAGCTCGGATGATTTATGGATGTATGCTCCGATCGCTTACAACGGAATGGATATCGGGCTTAATCCGACCCCGAACACACCGAAACCCATTCAAAGGCATAAGTCAATCACACGAGTCCTCTGCAACTGCCCAAATAAGAATCTGGAGGACTCCTCAGCATGCTATAGTCTGTCAAATTCAAAACCATTTGACGTTTTAGTGTCATATATTACAAGAATGTAA 1059 44.19 MAHLTAPIAEGDDQWSSLNGAFTADEEEAMFVAQLFAPPDPFMANLHDLHQPPCEPASCSSFYRVSQESSEFSGGSYCSQLLFSGSENNDNDNYYYCNPMDNHDFSLGELGNNNNGGFQLEDHEDSMNIEAVLGEEGGNPRDINCKKRSRGSGDLQKRRNEKSKKTQKLITEEDGNNAAHNRQSTSSYCSEDESNASLELNGGVNNSGPSPNGPTKSRASRGSATDPQSLYARRRRERINERLKILQTLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNPTPNTPKPIQRHKSITRVLCNCPNKNLEDSSACYSLSNSKPFDVLVSYITRM 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6318015 6323838 - CmaCh19G005540.1 Cma19g00554 315242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00554 352 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 116 301 - -
Cma19g00554 352 MobiDBLite consensus disorder prediction 134 235 - -
Cma19g00554 352 MobiDBLite consensus disorder prediction 140 171 - -
Cma19g00554 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 223 272 IPR011598 GO:0046983
Cma19g00554 352 Gene3D - 225 281 IPR036638 GO:0046983
Cma19g00554 352 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 116 301 - -
Cma19g00554 352 Pfam Helix-loop-helix DNA-binding domain 233 273 IPR011598 GO:0046983
Cma19g00554 352 CDD bHLH_AtIND_like 224 286 - -
Cma19g00554 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 288 IPR036638 GO:0046983
Cma19g00554 352 SMART finulus 229 278 IPR011598 GO:0046983
Cma19g00554 352 MobiDBLite consensus disorder prediction 172 227 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01701 Cma19g00554 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00554 Cma-Chr19:6318015 Cma10g00480 Cma-Chr10:2188836 6.55E-21 dispersed
Cma11g01701 Cma-Chr11:11238101 Cma19g00554 Cma-Chr19:6318015 1.16E-95 wgd
Cma12g00596 Cma-Chr12:3109902 Cma19g00554 Cma-Chr19:6318015 2.15E-45 wgd
Cma16g00324 Cma-Chr16:1521773 Cma19g00554 Cma-Chr19:6318015 3.37E-51 wgd
Cma19g00554 Cma-Chr19:6318015 Cma04g00451 Cma-Chr4:2305604 6.77E-51 wgd
Cma19g00554 Cma-Chr19:6318015 Cma05g00143 Cma-Chr5:640612 7.39E-52 wgd
Cma19g00554 Cma-Chr19:6318015 Cma09g00285 Cma-Chr9:1167219 1.61E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36892 PF00010 HLH 1.40E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00554 - - cmax:111471089 504.597