Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00561 ATGGCTTCTGATCTTATCATCCTCTGCTTTCTCCTTCTGGGTCTCTCTTTTTCGCCTGTAATTTCCACTAATTCTGAAGGAAATGCTCTACATGCTCTTAGGAGAAGGCTGTCTGATCCCACTAATGTGCTGCAGAGTTGGGACCCTACGCTGGTTAATCCTTGCACTTGGTTTCATGTAACCTGTGATTCTGAAAACCATGTGATACGCTTGGATTTGGGAAACTCGAACATTTCCGGGACTTTGGGGCCTGAAATTGGTGACCTCCAGCATCTTCAATATCTGGAGCTCTACAGGAATGGGATAAGTGGAAAAATCCCCACTGAGATAGGTAATTTGAGAAACCTCGTAAGCATGGATTTGTACGAGAACAAATTTGAAGGAAAGATTCCAAAATCTTTGGCCAAACTCAAGTCACTTAGATTTCTACGGATGAACAACAACAAGTTAACAGGCATGATTCCAAGGGAACTTTCATCACTCTCTAAACTCAAAATTTTTGATGTCTCAAACAATGATCTCTGTGGAACAATCCCTGTTGATGGACCATTTGCTGATTTCTCGATGGAAAGTTACGAAAACAACAGGCTGAGTGGCCCCGAGTTGCAAGGACTTGTACCATATGACTTTGGATGCTGA 639 42.57 MASDLIILCFLLLGLSFSPVISTNSEGNALHALRRRLSDPTNVLQSWDPTLVNPCTWFHVTCDSENHVIRLDLGNSNISGTLGPEIGDLQHLQYLELYRNGISGKIPTEIGNLRNLVSMDLYENKFEGKIPKSLAKLKSLRFLRMNNNKLTGMIPRELSSLSKLKIFDVSNNDLCGTIPVDGPFADFSMESYENNRLSGPELQGLVPYDFGC 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6373910 6378242 - CmaCh19G005610.1 Cma19g00561 315249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00561 212 PANTHER LRR AMINO-TERMINAL DOMAIN PROTEIN 6 209 - -
Cma19g00561 212 SUPERFAMILY L domain-like 24 208 - -
Cma19g00561 212 Gene3D Ribonuclease Inhibitor 22 205 IPR032675 -
Cma19g00561 212 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Cma19g00561 212 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 6 209 - -
Cma19g00561 212 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00561 - - - csv:101217099 398.282
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01706 Cma19g00561 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g01413 Cma-Chr17:9342071 Cma19g00561 Cma-Chr19:6373910 1.83E-87 dispersed
Cma19g00561 Cma-Chr19:6373910 Cma16g00247 Cma-Chr16:1147203 3.75E-71 dispersed
Cma11g01706 Cma-Chr11:11298794 Cma19g00561 Cma-Chr19:6373910 3.37E-140 wgd
Cma19g00561 Cma-Chr19:6373910 Cma03g00889 Cma-Chr3:6534874 6.04E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g682 . . . . . Bpe12g00304 . . Cmo19g00574 Cmo11g01412 . . . . . Cpe04g00320 Cpe15g00448 . . . . . . . Cla02g00672 Cam02g0706 Cec02g0719 Cco02g0740 Clacu02g0713 Cmu02g0710 Cre02g1024 . . Cone3ag1020 Cone10ag1036 Lsi03g00566 Csa07g00694 . Cme01g00111 . . Bda15g00835 . . . . Bma08g00454 . . . Cma11g01706 Cma19g00561 . . . . . . . . . . . . . . . . . . . . Chy01g00121 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009528 1 1 0 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00561 Cma_Chr19 FPKM 3.714985 4.611252 4.719687 4.400921 1.796456 1.84399 2.242371 10.208662 10.344831 12.407336