Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00562 ATGATGTTGAGGTCGTGCTGCAGGCCGCTCGAGCGGTTTATTGGACGGTGGGCCGGCGATGGGCTGCTGTGGCAGTCGGAATTGAAGGCTCATGCTTCTGGTGATTATTCGATCGCTGTTGTGCAGGCTAATTCCTGTCTTGAGGATCAGAGTCAGGTGTTCACGTCCTCCTCTGCTACGTATGTTGGTGTTTATGATGGCCATGGCGGCCCTGAGGCTTCTCGCTTTGTGAATAAGCATCTTTTTCCTTATATGCATAAGTTTGCTTCAGAACAAGGTGGGCTATCGGAGGATGTTATTAAGAAGGCATTCAATGCCACAGAAGAGGAGTTTCTGCGTTTGGTTAAGCGGGCTTTGCCTGCAAAGCCACAGATTGCTTCAGTTGGATCGTGCTGTCTTGTAGGTGCAATTTCAAATACGAAGCTATACGTAGCGAATCTCGGAGATTCGAGAGCTGTGCTTGGCCGTAAAGTTTCGGGGAGTAAGAGAACACCGGTAGTTGCAGAACGGTTGTCGACTGATCACAATGTTGGAGTAGATGAAGTTAGGAAAGAGGTTGTAGCACTTCATCCTGATGATTCCCATGTAGTTGTCTATACCCGTGGTGTTTGGAGGATCAAAGGCATAATTCAGGTTTCAAGATCTATAGGTGACGTCTATCTAAAGAAACCCGAATTCAACCGGGATCCAATATTCCAACAATTCGGGAACCCCGTTCCATTAAAGCGAGCAGTAATGACTGCAGAACCTTCAATCCTAACTCGAGAGCTTAAACCTCAAGACCTATTCCTGATCTTTGCATCAGATGGCCTCTGGGAACAACTTACTGATGAGGCTGCTGTGGAGATAGTTTCCAAGAACCCAAGAGCGGGAATTGCAAAGAGATTAGTTCGTGCTGCCCTCCACGAGGCAGCAAGGAAACGGGAGATGAGATACACCGACTTAAAGAAGATCGAAAAGGGGATTCGGCGTCATTTCCACGACGACATCACTGTCATTGTCGTTTATCTCGACCACAACATAAGCTCACATGCCCGTGGAGCTAAGAACGCTATTGCCGGGTACACCACTGCACCTGTTGATATTTTCTCTCATAACTCAAACTACGAGGCAGAGGAAAAAGTTCACACAAAGATCTAA 1140 47.28 MMLRSCCRPLERFIGRWAGDGLLWQSELKAHASGDYSIAVVQANSCLEDQSQVFTSSSATYVGVYDGHGGPEASRFVNKHLFPYMHKFASEQGGLSEDVIKKAFNATEEEFLRLVKRALPAKPQIASVGSCCLVGAISNTKLYVANLGDSRAVLGRKVSGSKRTPVVAERLSTDHNVGVDEVRKEVVALHPDDSHVVVYTRGVWRIKGIIQVSRSIGDVYLKKPEFNRDPIFQQFGNPVPLKRAVMTAEPSILTRELKPQDLFLIFASDGLWEQLTDEAAVEIVSKNPRAGIAKRLVRAALHEAARKREMRYTDLKKIEKGIRRHFHDDITVIVVYLDHNISSHARGAKNAIAGYTTAPVDIFSHNSNYEAEEKVHTKI 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6383319 6386345 + CmaCh19G005620.1 Cma19g00562 315250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00562 379 CDD PP2Cc 42 337 IPR001932 -
Cma19g00562 379 SUPERFAMILY PP2C-like 43 338 IPR036457 -
Cma19g00562 379 Pfam Protein phosphatase 2C 51 305 IPR001932 -
Cma19g00562 379 Gene3D - 24 348 IPR036457 -
Cma19g00562 379 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Cma19g00562 379 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 372 - -
Cma19g00562 379 PANTHER ALPHABET, ISOFORM E-RELATED 4 372 - -
Cma19g00562 379 ProSiteProfiles PPM-type phosphatase domain profile. 35 337 IPR001932 -
Cma19g00562 379 SMART PP2C_4 25 335 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01709 Cma19g00562 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00562 Cma-Chr19:6383319 Cma11g01366 Cma-Chr11:9047629 2.28E-138 dispersed
Cma11g01709 Cma-Chr11:11316431 Cma19g00562 Cma-Chr19:6383319 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00562 - K01102 csv:101216862 693.345